KEGG   Pimephales promelas (fathead minnow): 120481773
Entry
120481773         CDS       T08155                                 
Symbol
smfn
Name
(RefSeq) small fragment nuclease
  KO
K13288  oligoribonuclease [EC:3.1.-.-]
Organism
pprm  Pimephales promelas (fathead minnow)
Pathway
pprm03008  Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:pprm00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    120481773 (smfn)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pprm03019]
    120481773 (smfn)
   03009 Ribosome biogenesis [BR:pprm03009]
    120481773 (smfn)
Messenger RNA biogenesis [BR:pprm03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     120481773 (smfn)
Ribosome biogenesis [BR:pprm03009]
 Eukaryotic type
  Pre-60S particles
   RNases
    120481773 (smfn)
SSDB
Motif
Pfam: RNase_T Rv2179c-like
Other DBs
NCBI-GeneID: 120481773
NCBI-ProteinID: XP_039531519
LinkDB
Position
Unknown
AA seq 252 aa
MWSAARVSAFRVLTRVCVSSQRVQAFPPVFTAHSRCAPVLAQGLMSRRADSRKMSQSAAQ
RMVWVDLEMTGLDIEKDRIIEMACIVTDSDLNIIAEGPNLIINQPDDLLDGMSDWCKEHH
GKSGLTQAVRDSHMTLQQAEYEFLSFVRQHTPPGQCPLAGNSVHADKRFLDKFMPQFMRH
LHYRIIDVSTIKELSRRWYPEDYALAPQKAASHRALEDIQESIKELKFYRANVFKVTEKR
KAVENGDKTPVS
NT seq 759 nt   +upstreamnt  +downstreamnt
atgtggagtgcagcgcgtgtttccgcattcagagtcctgactcgagtctgcgtgtcatca
cagcgggttcaagcattcccaccagtgtttacagcccacagccgatgtgcccctgtgctc
gcccagggtttgatgtccagacgagctgacagcaggaagatgtctcagtccgcggcgcag
cggatggtctgggtggatctggagatgaccggtctggatatcgagaaggacaggattatc
gagatggcctgtatagtgacagactcggacctgaacatcattgcagaggggccgaatctg
atcatcaaccaaccagatgatctgcttgacggcatgtcagactggtgcaaagagcatcat
gggaagtcaggcttgacgcaggccgtccgggacagtcacatgaccctccagcaggcggag
tacgagttcctgtccttcgtccgccagcacacgccgcccggacagtgtcctctcgcaggg
aactccgttcacgccgataagaggtttctggataagttcatgccgcagttcatgagacat
cttcactaccgcattatagacgtgagcaccattaaagagctgtccagacgctggtatccg
gaggactacgctctcgccccacagaaggcggcatcgcacagagcgctggaagacatccag
gagagcataaaagaactgaagttttacagagccaacgttttcaaagtgacggagaagaga
aaagcagtcgaaaacggcgacaagacgcctgtgagctaa

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