KEGG   Pimephales promelas (fathead minnow): 120481955
Entry
120481955         CDS       T08155                                 
Symbol
ercc8
Name
(RefSeq) DNA excision repair protein ERCC-8
  KO
K10570  DNA excision repair protein ERCC-8
Organism
pprm  Pimephales promelas (fathead minnow)
Pathway
pprm03420  Nucleotide excision repair
pprm04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:pprm00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    120481955 (ercc8)
  09124 Replication and repair
   03420 Nucleotide excision repair
    120481955 (ercc8)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:pprm04121]
    120481955 (ercc8)
   03400 DNA repair and recombination proteins [BR:pprm03400]
    120481955 (ercc8)
Ubiquitin system [BR:pprm04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     120481955 (ercc8)
DNA repair and recombination proteins [BR:pprm03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      120481955 (ercc8)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 WD40_MABP1-WDR62_2nd Beta-prop_TEP1_2nd EIF3I Beta-prop_RIG_2nd Beta-prop_CAF1B_HIR1 Beta-prop_WDR90_POC16_2nd Beta-prop_EIPR1 WDR55 Beta-prop_WDR75_1st ANAPC4_WD40 Beta-prop_EML NBCH_WD40 Beta-prop_TEP1_C WDR90_beta-prop_4th WD_LRWD1 Beta-prop_WDR19_1st WD40_MABP1-WDR62_1st Beta-prop_IFT122_1st Beta-prop_RIG_1st Beta-prop_WDR35_TULP_N Beta-prop_HPS5 Beta-prop_SCAP Beta-prop_IFT140_1st Beta-prop_RSE1_2nd Beta-prop_IFT140_2nd Nucleoporin_N Cytochrom_D1
Other DBs
NCBI-GeneID: 120481955
NCBI-ProteinID: XP_039531801
LinkDB
Position
Unknown
AA seq 400 aa
MLSFLYARQSGVDDPVRLRRAESTRRVLSLELNHNRDVARVHGNGINTLDIEVIDGRYML
SGGSDGVIVIYDLENNSKKLQYSCKTVCTVGRSSRHVHKFSVETVQWYPHDTGMFVSSSF
DKTMKVWDTETLKPAEEFQFDGNVYCHHMSPVARKHCLIAVGTKDPKVQLCDLKSGSRIH
ILQGHRGEILSVRWSPRYEHILATASTDSRVRVWDVRRASGSLFTLDQHNGDKSKASSEA
VNTAHNGRANGLCFTADGLYLLTTGTDDRMRLWNSATGENTLVNYGKVVNESRKGLKFTV
SRGCSSEFVFVPCGTSVAVYGLHSGELITMLRGHYNNVDCCEFHPDYQELYSGGKDCNIL
AWVPVLRQPVIEDEETNSKRGGTQAAVNPAFEDAWSSDEG
NT seq 1203 nt   +upstreamnt  +downstreamnt
atgctgagttttctatatgcccggcagtcgggggttgacgacccagttcgcctgagacgt
gcagagtccacgcgaagggtgcttagtctggagttgaaccacaacagagatgtggctcgt
gtccatggcaatggaattaacaccctggacattgaggttattgatggaagatacatgtta
tcgggtggatctgatggtgtaatagtgatctatgacttggaaaacaacagcaagaagctt
caatactcttgcaaaacagtctgcacagtgggcaggtccagtcggcatgtgcataaattc
agcgttgaaacagtgcagtggtacccacatgacaccggtatgtttgtgtccagctcattt
gacaaaaccatgaaagtttgggacacagaaactctgaagccagctgaggagttccagttc
gatggtaatgtctactgtcatcacatgtctcctgtagccaggaagcactgtcttatagca
gttggtaccaaagaccctaaagtgcagctttgtgatctgaagtctgggtcgcgcatccac
atcctacagggccataggggtgagatcctctcggtgagatggtctccacgatatgagcac
atcctggccactgccagcactgacagcagggttcgcgtctgggatgtgagaagagcctct
gggagtctttttactttggaccagcacaatggggacaaatccaaggcctcatctgaagca
gtgaacacagcacacaatgggcgagcaaatggattgtgcttcacagctgatggactctat
ctcctcactaccggtacagatgatcgaatgcgcctgtggaatagtgccacaggggaaaac
acattagtgaattatggaaaagtcgtcaacgagagccgcaaaggcctcaagtttaccgtg
tcgaggggctgcagttcggagtttgtgtttgtgccgtgtggcacttcggtagcggtgtac
gggcttcactcgggagagctgatcaccatgttgagaggacattataataatgtagactgc
tgtgagttccacccagattatcaggagctgtacagtggaggtaaagactgtaacatcctg
gcctgggtcccagtgctaagacagcctgtcattgaggatgaagaaaccaactctaaacgg
ggtggaacacaagctgcagtcaatcctgcttttgaagatgcctggagcagtgatgaaggc
tga

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