Pimephales promelas (fathead minnow): 120482022
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Entry
120482022 CDS
T08155
Name
(RefSeq) LOW QUALITY PROTEIN: protocadherin alpha-C2-like
KO
K16493
protocadherin alpha
Organism
pprm
Pimephales promelas (fathead minnow)
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pprm03036
]
120482022
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pprm04515
]
120482022
Chromosome and associated proteins [BR:
pprm03036
]
Eukaryotic type
Centrosome formation proteins
Other centriole associated proteins
120482022
Cell adhesion molecules [BR:
pprm04515
]
Cadherins
Protocadherins
120482022
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_tail
Cadherin_2
Cadherin_C_2
Cadherin_3
Motif
Other DBs
NCBI-GeneID:
120482022
NCBI-ProteinID:
XP_039531873
LinkDB
All DBs
Position
Unknown
AA seq
993 aa
AA seq
DB search
MAVAGICDCLDKKVPLSFLLFLLFCGLALGQIRYSVPEESDSGTIVGDIAQDLGLDIRKL
STRKIKVTSDSGRRYVDHKNGKLLVNERIDRETLCDSSTACVLNLEVLLENPSEDHNVEV
EITDVNDNTPQFPRDEYQLEITESALPGSRFPIEHAQDPDIGTNSVRLYRLSPNEHFALD
SNKPSLNTKHIELVLKKPLDRELSPYHQLILTATDGGTPARTGTAKINVRVLDSNDNNPV
FDSSVYKVKLLENSPKDTLVIKLNATDQDEGTNGEVFYSFSSYTPDXVRQMFSMDTNTGE
IRVKSNVDYEDTTSYEMYIQAMDKGPAPVAAHCKVVVEVVDVNDNVPEIVISSLSSPVRE
DARADTVVALISVTDRDSGPNKQVTLEIPPGLPFKIKSFRNYYTLVTSAFLDRENTAAYN
VTLSATDGGNPPLSSKKTIQVDVADVNDNPPRFDQTSYTVYVMENNAPGASLCTIKAQDS
DVNENARITYTVLNDNNHGILVTSYVSVKADTGVAYALRSFDYESLREFHFQVKAQDGGI
PPLSRVATVYIYIMDQNDHPPEIVNPPANGTRSTETVLKNAEPGTLISKVVAYDADAGQN
AWVIYLLDQASDLDLFKVHEHTGEIRTTRRVLEDNSTSFGLTVLVRDHGEPPLSSTATIN
IAVMEVPPKVMPDPKRIIRPHSALLFSKVTLYLIVALSATTFVFLVTVVVLAIVRCHAYC
TQPGSCSPCCVSQKAQAEGGSGGGGGGGGGGGGGGGGAQPNNNVVLRRDLKVEPHYIEVR
GNGSLTKTYCYKTCLTATSGSDTFMFYNTGRPISGTWGSERFFTGGSGFVRRLSMPDAAI
QPKGPNADWRYSASLRAGVQSSVHMEEASAVMQGAQGMLVQNWPTVSSAADGEGEGQLSP
PVGAGINSNSWSFRYGAGPGYGPPQALKPGEIPPEAFIIPGSPAIISIRQDPGAVDDKGE
FITFGKKEESKKKKKKKKEKKDKKDKGKDDGEE
NT seq
2982 nt
NT seq
+upstream
nt +downstream
nt
atggctgttgcagggatatgtgattgcctagataaaaaagtgcctctttcttttttgcta
tttttattattttgtggccttgctctcggacaaatacgatattccgtgccagaggaatcg
gatagtgggacgattgtaggtgatattgcacaggatttgggtttggatattcgaaagctc
tccacccgaaagattaaggtaacctctgacagcggcagaaggtacgtggaccataagaat
ggaaaattattggtaaacgagagaattgacagagagacattgtgtgactcgagcaccgcg
tgtgttttgaatcttgaggttcttctagaaaacccatctgaagaccataatgtcgaggtg
gagattacagacgtgaatgataatacgccgcagttccccagagacgagtatcaattggaa
atcactgaatcggctttgccgggctctcgttttccgatcgaacacgcgcaagatccggac
attggaaccaattcggttcgattgtaccggctcagcccaaacgagcattttgctctcgat
tccaacaagccttcattgaatactaagcacatcgagctcgttctcaaaaagcccttggat
cgcgagctctcaccttaccatcagttaatcctgacagcgaccgacggtggcacaccagca
cgaacaggtaccgcaaaaattaacgttcgcgtcttagattcgaatgacaacaatcccgtt
tttgacagctcggtatataaagtcaaattgcttgaaaattcgcccaaagacactttggtt
atcaaactgaatgccacagaccaagacgagggaacaaatggggaggtgttttattcattc
agcagttacaccccagatnaggtcaggcagatgttcagcatggacaccaacactggagaa
atcagagtaaagagcaatgtggactacgaggacaccacttcgtatgaaatgtacatccag
gccatggacaaaggcccagctccagttgcagcccattgcaaagtggtggtggaggttgtg
gatgtcaatgacaatgttccagagattgtgatctcatctttgtccagtccagtgcgtgaa
gatgcccgtgcagacaccgtggtggccctgatcagcgtgacggaccgggactctggccct
aacaaacaggtcacccttgaaattccacctggtcttcctttcaaaatcaagtcgtttaga
aattactataccttggtaacctcagcctttcttgaccgtgagaacacagcagcctataac
gtcaccctcagcgctacagatggcggcaaccctccactttcatcgaagaagaccattcag
gtggatgtcgctgatgtgaacgacaaccctccacgctttgaccagacctcctacactgtg
tatgtcatggagaataatgcacccggagcctcgctctgcaccatcaaggctcaggactca
gatgtcaatgaaaacgctcgcatcacctacacggtcctaaacgacaacaatcacgggatc
ctggtcacctcctatgtgtcggttaaagcggacactggtgttgcctatgctcttcgctct
tttgactacgagtcattacgggagtttcacttccaggttaaagctcaggatggtggtatc
ccaccactcagtcgtgtagccactgtctacatctacataatggatcaaaacgaccacccg
cctgagattgtgaatcccccagccaacggcacgcgctcaacagagacggtgttgaaaaat
gcagagccaggtacattgatctcaaaagtggtggcctatgatgcagatgcaggacagaac
gcgtgggtcatctatctgctggaccaggccagcgatctggatctatttaaagtgcatgaa
cacacaggagaaattcgtacaacgaggcgtgtccttgaagacaactccacctcttttggt
ctaaccgtactagtaagggaccatggcgaaccacctctatcatccaccgctaccattaac
attgctgtcatggaggtgccacccaaagtcatgcctgaccccaaacgaatcatccgccct
cacagcgctctcttgttttctaaagtgacactgtacctcatcgtggccttgagcgccacc
acctttgtttttttggtgactgttgttgtgctggccatcgtgcgctgccatgcgtactgc
acccagccaggatcctgttcgccatgctgtgtgtcccagaaggcccaagcagaaggtgga
tcgggagggggcggtggaggaggcggcggcggcggtggtggtggtggtggtgctcaaccc
aataacaacgtggtgctccgaagagacctcaaggttgagcctcattatattgaggtccgg
ggtaatgggtctctgaccaagacctattgctacaagacctgtctgactgccacgtcgggc
agtgacaccttcatgttctacaacacaggccgacccatcagtggcacctggggctccgag
cgcttttttacaggagggagtggatttgtccgcaggcttagtatgccagatgcagcaata
cagcccaaagggccaaatgctgactggcgttactctgcgtcgctgagggcaggagtgcag
agctctgtgcatatggaggaggcttcagctgtgatgcagggagcacaaggcatgctggtc
cagaactggcccacggtctccagcgctgcagatggggagggagagggacagctgtcccct
cctgtaggagctggaatcaacagtaacagctggagcttccgctacggcgcgggccccggc
tacggtcctccacaagccctgaagccgggagagattcctcctgaagccttcatcattccc
ggctcccctgccatcatttccatccggcaggatccaggtgctgttgatgacaagggcgag
ttcatcaccttcggaaagaaagaggagtccaagaagaagaaaaagaagaagaaggaaaag
aaggacaagaaggataaagggaaagacgatggcgaagagtaa
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