Pimephales promelas (fathead minnow): 120482068
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Entry
120482068 CDS
T08155
Symbol
sbno1
Name
(RefSeq) protein strawberry notch homolog 1 isoform X1
KO
K26273
protein strawberry notch
Organism
pprm
Pimephales promelas (fathead minnow)
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pprm03036
]
120482068 (sbno1)
Chromosome and associated proteins [BR:
pprm03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
120482068 (sbno1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_34
Helicase_C_4
SBNO
ResIII
Helicase_C
Motif
Other DBs
NCBI-GeneID:
120482068
NCBI-ProteinID:
XP_039531969
LinkDB
All DBs
Position
Unknown
AA seq
1402 aa
AA seq
DB search
MDPGQDLLLAALSESGICPNDLFDVDPQDTLPLPASQQSVSLNALDIGLSNETSGSARFE
PTVPPTPTVTIREKPQPSTTTFVLNQLNQLPSLGTIVVTKPSTGTGSRQTITVTKVVHTS
STAQQRSLSSSTVGASNNDQIRLKDLLRSSSLKTSSLGELMKLKPPPDIAQPVATATATG
TKIILVSTKMMSRSAELNNGLKKEVSSKDVARIWVNDDMKMRSFSPVNKLPGMKEEDEPE
EEEEEELGHAETYAEYMPMKLRIGLRHPDPVVETSSLSSVNPPDVWYRLSITEETIDRGW
LSALQLEAITYAAQQHETFLPNGDRAAYLIGDGAGVGKGRTIAGIIYENYLLGRKRSLWF
SVSNDLKYDAERDLRDIGAKNIQVHSLNKFKYGKISSKHNGSVKKGVIFATYSSLIGESQ
SGGKYKTRFKQLLHWCGDDFDGVIVFDECHKAKNVCPIGSSKPTKTGLAVLELQNKLPKA
RVVYASATGASEPRNMAYMNRLGIWGEGTPFKEFTNFIQAVERRGVGAMEIVAMDMKLRG
MYIARQLSFTGVTFKIEEVPLTQSYIKMYNKSVRLWVSAREKFQQAANLMDAEQRMKKSM
WGQFWSAHQRFFKYLCIASKVRRVVQLAREDVKNGKCVVIGLQSTGEARTLEALEEGGGE
LNDFVSTAKGVLQSLVEKHFPAPDRQKLFSLLGIDLSVKKKPSPLETPTEQKGKKRKGPE
TKKQVKKARKSGGLSGSSSDESNSDDSDKDAESDDSFKSVSSGEEDEDDFNPFKDDSSED
EEDDPWLIRKDSKKSKEKRNKKKKKSIDPDSIQSALLASGLGTTRPTFTTPTIKPSNNTV
AVAKIEPEESSCVTSQDAVEDAQRMKRELLDQLEQLAEDLPPNTLDELIDELGGPENVAE
MTGRKGRVVSNDDGSISYESRSELDVPVEILNLTEKQRFMDGDKNIAIISEAASSGISLQ
ADRRVKNQRRRVHMTLELPWSADRAIQQFGRTHRSNQVTAPEYVFLISELAGEQRFASIV
AKRLESLGALTHGDRRATETRDLSRFNFDNKYGRNALEIVMKSIVSLDSPLVSPPGDFNG
DFFKEIRNGLIGVGLINVEDRSGVLSLDKDYNNIGKFLNRILGMEVQQQNALFQYFSDTL
SAVIQNAKKTGRYDMGILDLGSGDEKVKKVDAKKFLTPGYSTSGHVELYTVSVERGMSWE
DATHVWADQNGPDDGFYIQVRNNKKIAILIKEVNPRKRLFMVYRPNIGKQVKLETYADLK
KRSKKVLSDDAKQHWIDQYNCSADVCSHAYWRGNCKKVSVGLQCEIGLRCRTYFVLCGSV
LSVWTKVEGVLASVSGSNVKMQIVRLRTEDGQRIVGLIIPANCVSPLINILSSSDQSQQL
AVQQQQMWQQLHPQSISHTVNT
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atggatcctggacaagatttgcttctcgctgctctaagtgaaagtggaatctgccctaat
gatctgtttgatgttgatcctcaggacacacttccactccctgcctcacaacagtcagtc
tcattaaatgcacttgacatcggtctcagtaatgaaacttctggatctgccaggtttgaa
cctacagttccacctactcctacagtcacaatcagggagaagccccagccctcaactact
acctttgttttaaatcaactgaatcagttgccatcgctgggtaccattgtcgtcaccaaa
ccatcaaccgggaccggctccaggcagaccatcacagtaaccaaggtggtacacacaagt
tcgacagcacaacagaggtctttatcatcttcaactgtgggcgcatcgaataatgaccag
atcaggttgaaggacctcctcagaagcagcagcctgaagacaagcagccttggagagctt
atgaagttgaagcccccacctgacatagcgcagcccgttgctacggcaacagccacaggc
acaaaaattattctggtctccacaaagatgatgagcagatcagcggaattaaacaatggc
ttgaaaaaagaagtgtccagcaaagatgtagcaagaatctgggtcaatgatgacatgaaa
atgcggagcttctcacctgttaataaattaccaggaatgaaggaggaagatgaaccagaa
gaagaggaagaggaggagctgggtcatgcggagacatacgccgaatacatgccaatgaaa
ctgagaattggactgcggcaccctgatcctgtggtggagaccagctctctgtccagcgtc
aacccgccagatgtgtggtacagactttccattacagaggagaccattgatagaggctgg
ttatctgccctccagctagaggccatcacgtatgctgctcagcaacatgagacattccta
ccaaatggagacagagcagcctacttgattggagatggagctggtgttggaaagggtaga
accattgctggaatcatatatgaaaattatcttcttggcaggaaaaggtccctatggttt
agtgtctcgaatgacttgaaatatgatgcagagagggacttgagagacatcggagcaaag
aacattcaggtccattcgctaaacaagttcaaatatggaaagatttcatcaaaacacaat
gggagtgtgaaaaaaggtgtgatctttgccacatactcttccctgattggagagagccag
tctggaggaaagtacaagacgagatttaaacagttactacactggtgtggagatgacttt
gatggtgttatcgtctttgatgagtgtcacaaagccaaaaatgtttgtcctattgggtca
tccaagcccacaaagaccgggttggcggttttagagctacagaacaagctgccaaaagcc
cgggttgtgtacgcaagtgctacaggagcatccgagccccgcaatatggcctacatgaat
cgccttgggatctggggagaaggaactccatttaaggagtttactaattttatccaagct
gttgagagaagaggtgtcggtgccatggagattgttgccatggatatgaagctgagaggg
atgtacattgctcgacagctgagcttcacaggcgtgacgtttaagattgaagaagttcct
ttgacgcagagctacatcaagatgtacaacaaatcagtccgcttgtgggtcagcgcaaga
gagaaattccagcaagccgccaacctaatggatgcagagcaacggatgaaaaagtccatg
tggggtcagttctggtcagctcatcagcggttcttcaagtacctgtgcattgcttctaaa
gttcgaagagtggtgcagctcgcccgagaggacgttaaaaatggaaagtgtgtggtgatt
ggtcttcaatcaactggagaagctcgaacacttgaggccttggaggagggaggaggcgag
ctcaatgactttgtctccactgcaaagggtgtactgcagtccctggtggagaagcatttt
cctgcaccagacagacaaaaactcttcagtcttttaggcatcgacctgagtgtgaagaaa
aaaccttcacctctagaaacccccactgagcagaaaggcaaaaagcggaaaggaccagaa
acaaagaagcaagtgaagaaggctcgtaaatctggtggtctctctggttccagctcagac
gagagcaactcggacgattcggacaaagatgcagaaagcgacgacagcttcaagtcagtc
agctcaggggaggaggatgaagatgactttaacccctttaaagatgattccagtgaggat
gaggaagatgatccgtggctcatcaggaaagactctaaaaagagtaaagaaaagaggaac
aagaagaagaaaaaaagcattgatcctgactctattcaaagtgccttgttagcctccggg
cttggaacaaccagacccacttttacaacccccaccatcaaaccttcaaacaacacagtt
gctgtagccaaaattgagccagaggagagcagctgtgtgaccagtcaggatgctgttgag
gatgcccagcgcatgaagagggagctgttggatcaactggagcagctggcagaggatcta
ccacccaacacgctcgacgaactcatcgatgagctgggaggccctgaaaacgttgcagag
atgactggccgcaaaggcagagtagtcagcaacgatgatggcagcatttcctacgagtct
cgatcagaacttgacgtcccagttgaaatcctaaacctcacggagaagcagaggttcatg
gatggagataagaacatcgcaattatctcagaggctgccagctctggcatttctcttcaa
gccgaccgcagagtgaagaatcagaggaggagggtacacatgacattagagctaccctgg
agtgctgacagagctattcagcaatttggtcgaacacacagatccaaccaggtcacagca
cctgagtatgtgttcctcatctctgaactcgctggagagcaacgattcgcctcaattgtt
gccaaacgactggagagcctgggtgctttaacacacggagacagaagggccacagagacg
agagatttaagccgatttaactttgacaacaaatatggcagaaacgctctggaaattgtc
atgaagtctatcgtcagtctggattctcctttagtgtctccacccggtgacttcaatggg
gatttcttcaaagaaatccgcaatggtttaatcggagtggggctgataaatgtggaggat
agatctggtgttctctccctagacaaagactacaacaacattgggaagttcctgaacagg
attcttggtatggaggtccagcagcaaaatgcactctttcagtatttctctgacacgttg
agcgctgtcattcagaatgccaaaaagactggaagatatgacatgggaattttagatttg
ggctctggagatgaaaaagtaaagaaagttgatgcgaagaaattcttgacaccaggatat
tccacctcagggcatgtggagctctatacagtgagtgtagagcgaggaatgtcatgggag
gatgccacccatgtctgggctgaccagaacggtcctgatgatggtttttacatccaggtg
cggaataacaagaaaattgccatccttataaaggaagtcaatcccagaaagagactgttt
atggtgtatagaccaaatatcggaaaacaagttaaacttgagacctacgctgacctcaag
aagagaagtaaaaaggtcctctctgatgatgccaagcagcactggattgatcagtacaac
tgctctgccgatgtctgctcgcacgcgtactggcgagggaactgtaagaaggtgtccgtg
gggctacagtgtgagatcgggctgcgctgcaggacatacttcgtcctctgtggctccgtc
ctcagcgtgtggaccaaagtggagggagttctggcctcagtcagcggatccaatgtgaag
atgcagattgtacgtttgagaacagaggatgggcagagaatcgtgggtctgatcattccc
gccaactgcgtgtcgcccctgatcaacatcctgtcatcatcagatcagtctcagcaactg
gcggtgcagcagcagcaaatgtggcagcaactgcatccgcagagcatcagccacaccgtc
aacacatag
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