Pimephales promelas (fathead minnow): 120482151
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Entry
120482151 CDS
T08155
Symbol
exosc8
Name
(RefSeq) exosome complex component RRP43
KO
K12586
exosome complex component RRP43
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120482151 (exosc8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pprm03019
]
120482151 (exosc8)
Messenger RNA biogenesis [BR:
pprm03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
120482151 (exosc8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
DNA_pol3_a_NI
Motif
Other DBs
NCBI-GeneID:
120482151
NCBI-ProteinID:
XP_039532123
LinkDB
All DBs
Position
Unknown
AA seq
277 aa
AA seq
DB search
MAAGFKTAEPLEYHRSFLKENCRPDGRELGEFRPTTLNISSITTADGSAMVKIGNTTVIC
GIKAELTTPPSDAPNKGYIVPNVDLPPLCSSRFRPGPPGEQAQAASQFIADVIESSDLIN
MEELCIEKAKLCWVLYCDIMCLDYDGNLLDACIIVLLAALKNAQLPEVTVNKETDLAEVD
IRKKRHLKISRHPVGSSFAVFDDSIIIVDPTAEEESLSTALMTVVTDEEDRLCAVHKPGG
TSLSGEKLQHCINRAITRNKEISKLVDKVIGSMKTTK
NT seq
834 nt
NT seq
+upstream
nt +downstream
nt
atggcggctggtttcaaaaccgcagagcctcttgaatatcacaggagctttttgaaagaa
aactgtcgtccagatggaagagaattgggagagtttagacccacaaccttaaatattagc
tccataactacagccgatggatcagcaatggtgaagattggaaacaccacagtaatctgt
gggataaaagctgaattaactacgccaccctctgatgctccaaataaaggatatatagtc
ccaaatgtagatctgcctccactgtgctcgtctagattcagacccggaccaccaggagaa
caggctcaggccgccagccaatttatcgcagacgtcattgagagttcagatttaataaat
atggaggaattgtgcattgaaaaagctaagctttgttgggtgctgtactgtgatatcatg
tgtttggattacgatgggaacttacttgacgcctgcatcatagttttgctggcagcttta
aagaacgcccaacttcctgaagtcactgtaaacaaagagacagatttagcagaagtcgac
atccggaagaagagacacttgaagatcagccggcacccagttggctcatcgtttgcagta
tttgatgattccatcatcatcgtcgaccccacggcggaagaggaaagcttgtctacagca
ttaatgactgtggtaacagacgaggaggatcgactctgtgccgtccacaaaccaggtggg
acgtcgttatccggtgagaagctacaacactgcatcaatcgagccataacgagaaacaaa
gagatcagcaaactagtggacaaagtcatcgggagcatgaagacgacgaaataa
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integrated database retrieval system