Pimephales promelas (fathead minnow): 120482478
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Entry
120482478 CDS
T08155
Symbol
xrn1
Name
(RefSeq) 5'-3' exoribonuclease 1 isoform X1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm03008
Ribosome biogenesis in eukaryotes
pprm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
120482478 (xrn1)
09123 Folding, sorting and degradation
03018 RNA degradation
120482478 (xrn1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pprm03019
]
120482478 (xrn1)
03009 Ribosome biogenesis [BR:
pprm03009
]
120482478 (xrn1)
03016 Transfer RNA biogenesis [BR:
pprm03016
]
120482478 (xrn1)
03036 Chromosome and associated proteins [BR:
pprm03036
]
120482478 (xrn1)
Messenger RNA biogenesis [BR:
pprm03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
120482478 (xrn1)
mRNA degradation factors
5'-3' decay
5' exonucleases
120482478 (xrn1)
Ribosome biogenesis [BR:
pprm03009
]
Eukaryotic type
Pre-60S particles
RNases
120482478 (xrn1)
Transfer RNA biogenesis [BR:
pprm03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
120482478 (xrn1)
Chromosome and associated proteins [BR:
pprm03036
]
Eukaryotic type
Gene silencing
piRNA pathway
120482478 (xrn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Motif
Other DBs
NCBI-GeneID:
120482478
NCBI-ProteinID:
XP_039532767
LinkDB
All DBs
Position
Unknown
AA seq
1711 aa
AA seq
DB search
MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCSHPNDEDVHFRISEEKI
FADIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKALEKGE
VLPTEARFDSNCITPGTDFMARLQEQLKYFVHSKLSTDKSWKGVNVYLSGHETPGEGEHK
IMEFIRSESSKPGHNPNTRHCLYGLDADLIMLGLTSHEPHFSLLREEVRFGGKKAQKRIT
APEETTFHLLHLSLMREYIDYEFSELRNKISFEYDLERIIDDWVLMGFLVGNDFIPHLPH
LHINHDALPLLYRTYISVLPSLGGYLNENGHLNLTHFEKYLEKLSEFDREHFSEVFVDLK
WFESKVGNKYLNEAAGLAAEEADVKALKKRKSSDDSLCLSALDGVRESHSTPGREGAEED
GEDDDMFETEFRQYKRTYYMTKMGVEVVSDEFLANQAKCYVEGIQWILHYYYHGVQSWSW
YYPYHYAPFLSDVRNISGLTLTFDLAKPFLPFEQLLGVLPSASKDLLPQGYQHLMTSLSS
PIVEYYPQDFKTDLNGKQQEWEAVVLIPFIDEKCLLAAMEPYSDKLTPSEKARNRHTECA
VYCFDKELDYSYSSSLPELFPNIVHCHVRQTPIPMDAWRVPLDHVGRRIDRGALYFCGFP
TLQHIHHKFYKKKSGVLVFQQSSRGENMILEILASQEMEQVEDVSALVLGKSLFVNWPHL
MEARVVAVSDGETKFSLDEPSGSQVLYRDNTVPPIKVTHLTDKEQKEWVKEVQGLSEHFN
RRKGIVIKETEVVVYAQLLTGRKYVIGENGTVHLEKQFAKQVLPFPYQTIVKDIKTFDSS
LARFKTLEELFPLGTTVFMVGNPYYGAMGDVQDSSDVISEGRVRVVFSVPCEPQLDALIQ
NQHKYSVKYCPGYVLASRLGITSYLVSRFSGSIFIGRGSKKNPHGEQKVNVGLNLKFNKK
NEEVPGYTKRTEKEWLYSAAVEDLLAEYLERFSEVFDFIARNSHDDVFYEDDIWPGVDEN
GAEKIQEIQGWLKTHPVSSTSRASCDLQILDSGIIEKIEEELDKTKAKKMNKKVRVTVKP
HLLFRPLEQQFGVIPDPDAEYHLFDRVVNVRESFSVPLGLRGTVIGIKGAEREAEVLYEV
LFDEEFAGGLTIRCSPSRGYRLPPSALINLSHGSRKEQGSHKLTAIVKPQPSSSSHVTHK
SQMGGLNHSPRSPFIPTQQQNGRQSFNLRTDSQGNRNSPHKGLNQKNQHKGSGNEKEFSN
VWQSLQSSGMPQKPPAHWQNNDGKNCGPVPYQHQLEGQNKPSQGSDPSNKFASGGSIRLL
KRNEDLNTALGQGPSNKASTEFEELLANLKISKDPEPTQHHLPKEPKNQSGEPLSPQSFA
MKGTLVLKEMLKIDSSGTSSAPDSTSGGQNSANPNSQLQNKRRSSKKLAARINTPQADAP
GLNAAPLLPPPPPLAGQPPLLPSMATELGRVCMGLGMRPPDFAFLRNRQSLTVCQVKLSN
GLLVHGPQCQSETEAKEKAALFALQRLPLQNSLGSFPLPPPIFPGVQQMRPLGPHPSMFG
QPAGSLLIPPQGFGPLHWGMQFPHQGQPFYGGTFPGARAPGPSAASGSHNQFVPLQVTKK
RVSGRTKNQEAKQGSGSSAYAGQTPGSGTAASASVTSSAPKTPPPSSTHEPADKPTPKTP
RQNANPHTPGSASKRKHRKLAVNFEAAKVTD
NT seq
5136 nt
NT seq
+upstream
nt +downstream
nt
atgggagtgcctaaattttatcgatggatatcggagcggtatccgtgtctgagtgaagtt
gtcaaggagcatcagatcccagagtttgacaacttatatttagatatgaatgggatcatc
caccagtgttcccaccccaatgatgaagatgtacacttccgtatttctgaagaaaaaata
ttcgctgacatatttcactacctggaggtactctttcgcatcattaagcccaggaaagtg
ttcttcatggctgtcgatggagtcgcacccagagccaagatgaaccagcagcgtgggaga
agattcaggtcagcgaaagaagccgaggataaaataaagaaggccttggaaaagggtgaa
gttttgcccacagaggccagatttgactctaactgcatcactcctggaacggatttcatg
gccaggctacaggaacagcttaaatattttgttcacagcaaactgtccacagacaaatca
tggaagggagtgaatgtgtatttgtctggtcatgagacccctggtgaaggagagcacaag
atcatggagttcattcgctctgagagctccaaaccgggtcataacccaaacacaagacac
tgcctttatggtctggatgctgaccttataatgcttggcttgaccagccacgagcctcat
ttttctctcctcagagaggaggtacgcttcggaggcaaaaaggcacaaaagaggataaca
gctcccgaggagacaacctttcacctgctccatctatcccttatgagggaatacattgac
tatgagttttcagagctcaggaataagatctcgtttgagtatgacctggagcggatcata
gatgactgggttttgatggggttcctggtggggaatgacttcatccctcatcttcctcac
ttgcacatcaatcacgatgctctgccgctgctctatcgaacttacatcagtgtgctgccc
agtctggggggctacctgaatgaaaacggtcatctcaaccttacccactttgagaagtac
ctcgagaagttgtcagagtttgatcgtgagcacttcagtgaggtgttcgtggatctgaag
tggtttgaaagtaaggtggggaacaaatacctgaatgaagcggccgggctggctgccgag
gaggctgatgtcaaagccttgaagaagagaaagtcttcagacgactctctctgtctttcc
gctcttgatggagtcagagaatctcacagcactccaggaagagaaggggcagaggaggat
ggtgaggatgatgacatgtttgaaacagagtttcgacagtataagcgcacctactacatg
accaagatgggtgttgaagttgtctcagatgaatttttggccaatcaggctaaatgttac
gtggagggaatccagtggatcttgcattactactaccatggagttcagtcttggagctgg
tattatccgtaccactacgctcccttcctttctgatgtgagaaacatctctggtctcaca
ttgacctttgatctggccaaacccttcttgccattcgagcagctcttgggcgtcctgcca
tcagccagcaaagaccttcttccacagggttaccagcatctgatgacatcactgagctca
cccattgttgagtattacccacaagacttcaaaacggacctgaatggcaagcagcaggag
tgggaggccgtggtgctcatcccgtttatcgacgagaaatgcttattagctgctatggag
ccctattcagataaactgactccatcggagaaggccaggaacagacatactgagtgtgcc
gtctactgctttgataaagagctggactattcttatagctcctcactgccggaactcttc
cccaacatagttcactgccatgtcaggcaaacaccaatcccgatggacgcttggcgtgta
cctctggatcacgtagggcgcaggattgacagaggagcgctttacttctgcggcttcccc
accctacagcacatccatcataaattttataagaagaagagtggggtattggtgtttcaa
caaagcagcagaggagagaacatgattctggagattttagcaagccaggagatggagcag
gtggaagatgtttcagcactggttcttggaaagtctttgtttgtgaactggccccatttg
atggaagctcgagttgtagctgtttcagatggagaaacaaagttttctttagatgagccc
tcaggatcacaggtgttgtatcgggataacactgtaccgcctattaaagtgacccatttg
actgataaagaacagaaggagtgggtcaaagaagtgcaaggcctctcagagcacttcaat
agacgtaaaggcattgtgatcaaagagactgaggtggtggtttacgcccagctgctgaca
ggcaggaagtatgtcattggtgagaacggaacagtccatttggagaagcagtttgccaaa
caggtcctgccctttccataccagacaattgtgaaggatatcaaaacctttgattcgtca
ttggcgcgcttcaaaacactggaggagctgtttccccttggaaccactgtctttatggtt
ggaaatccatattacggtgcaatgggagatgtgcaagattctagtgatgtcatcagtgag
ggacgagtcagagtggtcttctctgtaccatgtgaacctcaacttgatgccttaatacag
aaccagcataaatactcagtgaagtactgtcctgggtatgttcttgcctctcgccttggt
atcaccagctacctcgtctcaaggttctccggtagcatcttcatcggacgaggatccaaa
aaaaatcctcatggagagcagaaagtcaatgtgggccttaatctcaagttcaacaagaag
aatgaggaagttcctggctataccaagaggacagagaaggagtggctctactctgctgct
gttgaagatctcttggctgaatacttagagagattttcagaggtgtttgacttcattgca
cgaaacagtcatgatgacgtcttttacgaagatgacatctggcctggagtggatgagaat
ggggctgagaagatccaggagatccagggctggttgaaaacccatccggtcagctccacc
tcccgagcgtcatgtgatctgcagatcctggacagcggcatcatagagaagattgaggag
gagctggataaaacgaaggcaaagaagatgaacaagaaagtgcgtgtcaccgtgaagccc
catctgctttttaggcctctggagcagcagtttggtgttattccagatcctgatgcagag
tatcatctgtttgaccgtgtggttaatgtgagagagagcttctctgtccctcttggcctt
cggggaactgtcattggtatcaaaggagctgaacgcgaggctgaagttttgtatgaagtg
ctgtttgatgaggagtttgctggaggactcactatcaggtgctctcctagtcgtggctat
cgactgcctcccagtgccttaatcaacctgagtcatggcagcaggaaggagcagggctca
cacaaactcacggccatcgtcaaaccccagccctcgtcctcatctcacgtcacacacaag
agtcagatgggtggccttaaccactcgccacgctcaccgtttattcccacgcagcagcag
aatggccgacaaagtttcaatctcaggactgactctcagggcaacagaaactctcctcac
aaaggcctaaaccagaaaaaccaacacaagggttctggtaatgagaaggaattcagtaat
gtatggcagtctcttcagagttcaggaatgccccagaaaccaccagctcactggcaaaat
aatgatgggaaaaactgtggaccagtgccatatcagcaccagttggagggacaaaataaa
ccgagccaaggcagcgacccatccaacaaatttgcctctggtggcagtattagactcctg
aagaggaatgaggatctgaatacagctctcggacagggaccttcaaataaggcatctact
gagtttgaggagctgttagctaatctaaagatctcaaaggatcctgagcccacccagcac
catctgcctaaagagcccaagaaccaatcaggagagcctctttcaccacagtcctttgct
atgaagggaactctggtattgaaagaaatgttgaagattgacagctctggaacaagctct
gcccctgattccacttctggtggccagaattcagcaaaccccaacagccaactgcagaac
aagagacgctccagcaaaaaactagctgctcggataaacacccctcaggctgacgcccct
ggtctgaatgcggctcctcttcttcctcctcctcctcctctggctggacagccgcccctc
ctgcccagcatggccactgaactcgggcgggtatgcatggggcttgggatgagaccgcca
gattttgccttcctccgcaacagacagagtctgactgtgtgtcaggtgaagttgtctaac
ggtctgctggttcacggtcctcagtgccagtccgaaactgaagccaaagagaaagctgct
ctctttgcccttcaacgattgcctttgcagaactcgttgggttcattcccactgcctcca
cccatattccctggagtccagcagatgaggcctcttggccctcatccctccatgtttggt
cagccagcaggtagtcttctgatccccccacaagggtttggacctcttcattggggaatg
cagtttccccatcaagggcagccgttctatggaggtacttttcctggagcacgggcccct
gggccatcagcagccagtggatcccacaaccaatttgttccacttcaggtgaccaagaag
cgcgtttcaggcagaaccaagaaccaagaggcaaagcaagggtcgggcagctcagcctat
gctggtcagaccccgggcagtggaacggctgcttctgcctcagtgacctcatctgccccc
aagacccccccacccagcagcacccatgagcctgcagataagcccacacccaagacgccc
aggcagaacgccaatcctcacacgcctggctcggcctccaagcggaaacacaggaaactg
gcagtcaacttcgaagctgctaaagtgacagactga
DBGET
integrated database retrieval system
