Pimephales promelas (fathead minnow): 120482528
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Entry
120482528 CDS
T08155
Symbol
rorca
Name
(RefSeq) RAR-related orphan receptor C a
KO
K08533
RAR-related orphan receptor beta
Organism
pprm
Pimephales promelas (fathead minnow)
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pprm03000
]
120482528 (rorca)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
pprm03310
]
120482528 (rorca)
Transcription factors [BR:
pprm03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
120482528 (rorca)
Nuclear receptors [BR:
pprm03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
120482528 (rorca)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
120482528
NCBI-ProteinID:
XP_039532878
LinkDB
All DBs
Position
Unknown
AA seq
479 aa
AA seq
DB search
MRAQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNAIYSCSRQRNCLIDRTNRN
RCQHCRLQKCLALGMSRDAVKFGRMSKKQRDSLYAEVQKHQQSQERAGVLSNGGPGHAGD
EAGENGISHGRAYSRGSSTTLSDLDDITTLPDGLLLDLPLTPEEAADYCSLELLGGSGGS
SSSSQSSPEPSRHEFSDVTHIKHEYQTLHESGLFTRSLLNPPEGCSLMEIERITQNVVKS
HIETSQYSSEELKRLAWTLYTHEEIRVYQNKSTETLWQQCAVHITNAIQYVVEFAKRISG
FMDLCQNDQIILLKAGCLDVLLIRMCRAYNPINNTLLFDGKFTSPQLFKALGCDDLVSAV
FEMAKTLSRLQLSEEEMALFTATVLLSPDRPWLTDVQKVKKLQEKVYVALQHWLHKSGAN
EDKLSKMVSKLPMMKSISNLHIDKLEFFRLLHPETAYNFPALYREVFCSEITFPDSTEG
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atgagagctcaaatcgaagtaatcccctgcaagatttgcggggacaagtcatcgggcatc
cactatggggtgatcacttgtgaaggctgcaagggcttcttccgccgaagtcagcagaac
aatgcgatatactcctgctcgaggcagaggaactgtcttattgaccgaaccaatcgcaac
cgttgccagcactgccgcttgcagaagtgtctggcactgggcatgagccgcgatgcggtg
aagtttggccgcatgtcaaaaaagcagcgcgacagcctctatgccgaggttcagaagcac
cagcagtcccaggagcgggcaggggttctgagcaatggtggacccggccacgctggtgat
gaggctggggagaacgggatcagccatggccgggcttacagccggggctccagcaccact
cttagcgacctggatgacataaccacgctaccagacggtctcctgttggatctgccgctc
acaccggaggaagccgccgactactgcagcctagagctgctggggggaagcggtgggagc
agttcgtcctcccagagttctcctgagcccagcagacatgaatttagtgacgtgacacac
atcaaacacgagtaccagaccctgcacgagtcgggactcttcactcgctcattacttaac
ccacctgaaggctgttcattgatggaaattgaacggattacacagaatgtggttaaatcc
cacatcgagacaagtcagtacagctcagaagaactgaagagattggcttggaccctctat
acacatgaggagatacgtgtctaccaaaacaagtccacagagacgttgtggcagcagtgt
gctgtgcacatcacgaacgccatccagtatgtggtggagtttgccaagcgtatctctgga
ttcatggacttgtgtcaaaatgaccagattatccttctaaaagcaggctgcttggacgtg
ctgttgatccgaatgtgtcgggcctacaacccaatcaacaacacgctgttgttcgatgga
aaattcacgagcccgcagctatttaaagcgctcggctgtgatgatctggtgagtgctgtg
tttgagatggctaaaaccctgagccggctacagctgtctgaagaggagatggctctgttt
accgccactgtgcttctgtctccagaccgaccttggttgacagatgtccagaaggtgaag
aaacttcaggagaaggtctatgttgcgttgcaacactggcttcataaaagtggtgccaat
gaggacaaactttctaagatggtgtccaagttacccatgatgaagtccattagcaacctc
catattgataagctggagtttttccgcctccttcacccagaaacggcctacaacttccct
gctctctacagagaggttttctgcagcgagatcactttcccagactccactgagggctaa
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