Pimephales promelas (fathead minnow): 120482544
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Entry
120482544 CDS
T08155
Symbol
pcdh1a
Name
(RefSeq) protocadherin-1
KO
K16498
protocadherin delta 1
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
120482544 (pcdh1a)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pprm01009
]
120482544 (pcdh1a)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pprm04515
]
120482544 (pcdh1a)
Protein phosphatases and associated proteins [BR:
pprm01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
120482544 (pcdh1a)
Cell adhesion molecules [BR:
pprm04515
]
Cadherins
Protocadherins
120482544 (pcdh1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_FAT4_N
Cadherin_2
Cadherin_CELSR2_9th
PepSY
Fibulin_C
Motif
Other DBs
NCBI-GeneID:
120482544
NCBI-ProteinID:
XP_039532924
LinkDB
All DBs
Position
Unknown
AA seq
1190 aa
AA seq
DB search
MDLPVVLFLLWGLSLDLLSGAVGGILYRIHEEQPPSTLIGSLAADQGLPDTGHLYKLEVG
TPYLRVDGKTGDIFTTEIPIDRETLKDCRNKGKPCFLEFEVSVTDLIQNQSPRLIEGRIE
VQDINDNTPQFPSPVLTLSVPENTHMGSLFSIPLATDKDTERNGVADYTLTAGPEAVTLF
GLQVAEDRGEKLPQLIVLGSLDRELKDSYDLTIKAVDGGNPPRYSSALLRVVIADANDNA
PTFEKSSYEAEVAENSPIGHSVLQVRANDSDMGPNGEIEYTLHQAIDPVPKLLRIDRSSG
IIYVKGPLDREEINNLKFYVVARDKGPSPKSSKTYVSIDVMDQNDNAPAVEIRGIGLVTH
SDGVANISEDMPVGTAVALVQVSDKDEGENAVVTCVVAGDVPFQLRPASDSSVDNKRKYF
LQTTTPLDYERVKDYRVEIVAVDSGNPALSSTNSLKVQVTDTNDNSPIFSPALFEVEFAE
ENQPGEKVVDVVASDADSGTNAELVYSIIADSSTRGLFEIDPSSGEVRARSPLDREHKER
YEFRVTAADKGVPNHRGTATVVIKVLDRNDNDPKFMLSGYSFSVLENMPPLSPVGMVTVQ
DMDEGENAQVQLSVEPDVGKFVIQNGTGTILSSISFDREKESSYTFRLKAVDGGDPPRSS
YVGVTINVLDENDNAPVVTKPSNSSFMRLSPMAAPDSVVEVVEAEDIDSGSNAELVYSIA
GGNPHDLFYISPSNGEITLTKELTRKHSGLHRLVVKVSDRGKPSRHAIALVHIYVNETIA
NVSHVEALVGHSLYTPLDMDIAGDPDYGLAAQRSNIVYGSLAGVAGVVTVIVVVVFIRHR
LQREAKSGYQAGKKETKDLYAPKQGPKSGKGRKGKKGKPPKSPKPLGEDEEVSLQKSLKF
NLDGVNDSPRIHLPLTYPPGSPDLGRHYRSNSPLPSIQLQAQSPSASQKHQVVQELPAAN
TFVGTGGDDNSTGSDQYSDYSYKTNPPKYSTKTLPHRRVTFSTANPVQDQHDSSQQSYYD
SGLEESETPSSKSSSGPRIGPLALPEDHYERTTPDGSIGEMEHPETDIRSLPDVAMTGNC
SQECSELGHSDACWMPGQPSPVRKTRNPPKLSTFVPYQERGSLGRLANGSVRLGGEENRP
RLPPSRSAYSSSDHTPSDHAPLEEVPLRVTSEFPPTSPPSNHASKREIYL
NT seq
3573 nt
NT seq
+upstream
nt +downstream
nt
atggatctccctgtggtgttgtttctgctgtggggactgtcactggacttgctgagtggt
gcggtgggtggcattctataccgcatacatgaggaacagcctccgagcacactgattggc
agtctggcagctgaccaggggctaccagacactggacacctgtacaaactggaggtgggc
actccctatctgcgggtggatggaaaaaccggagatatctttaccactgagatccccata
gacagagagacactgaaggattgtcgtaataaaggcaagccctgctttctggagtttgag
gtgtccgtcacagaccttattcaaaatcagagtccacggctgatagagggaaggattgaa
gtgcaggatatcaatgataacacaccacaattcccctcacctgtccttaccctatcagtt
ccagagaacacccacatggggtcactcttttcaattccactggccactgacaaagataca
gagaggaatggagtagctgactacaccttaacggcaggaccagaggcagtaacactcttt
ggtctgcaagttgcagaggaccgaggtgaaaaattgcctcaactcattgtgttgggaagt
cttgatagagagctaaaggactcctatgacctcaccatcaaagctgtggatggaggcaat
ccacctcgctacagcagtgccttgctgagggttgtcattgctgatgccaacgacaatgca
cccacatttgaaaaatcctcctacgaagcagaggttgcagagaacagcccgatcggtcac
tccgtgttacaggtgagggctaatgattcagacatgggtcctaatggcgagattgaatac
acattacatcaggcaattgatcctgtgccaaaactgctccggatagaccgctcatcaggc
atcatatatgtcaaaggcccgttggatcgtgaggagatcaacaatttgaaattttacgtt
gttgcacgagacaaaggtccctcacccaaaagttctaaaacgtatgtttctattgatgtg
atggaccagaatgacaatgcaccagcagtggagattcgaggcattggtcttgtgacccat
agtgatggagtggcaaacatttcagaggatatgccagttggtacagcagtggcattggta
caggtttcagacaaggatgagggagagaatgccgtggtgacctgtgtggttgcaggtgat
gttcctttccagcttcggccagccagtgattcatcagttgacaacaagaggaagtacttt
ctgcagaccacaacacccctggactatgaaagagttaaggactaccgggtggagatagtg
gcagtggattcaggcaatccagctctgtctagcactaactcgctgaaagtccaagtcact
gacacaaatgacaattccccaattttctcaccagccctgtttgaagttgagtttgctgag
gagaaccaaccaggagaaaaggtggtagatgtagttgcctctgatgcagacagtggcact
aatgcagagcttgtgtacagcattattgcggactcttcaacaagggggctttttgagatt
gaccccagctcaggcgaagtacgtgctcgaagccctcttgatcgcgagcacaaggagcgc
tatgagttccgtgttactgcagctgataaaggggttccgaatcacaggggtactgccaca
gttgtaatcaaagtacttgatcggaatgacaacgatcctaagttcatgctgagtggctac
agcttctcagtcttggagaacatgccacctcttagccctgttggtatggtaacagtacag
gacatggacgagggagagaatgctcaagtgcaactttctgtggaaccggatgtgggcaaa
tttgtgatccagaatggtactggcactattctgtccagtatttcatttgacagagagaaa
gaaagcagttacacattccggttgaaagctgtagatggaggggatccacccaggtcatca
tacgttggagtgaccatcaatgttctcgatgagaatgataacgcaccggttgtcactaag
ccatccaactcatcctttatgcgtctttctcccatggctgctccagacagtgttgtagaa
gtggtggaagcagaggacattgattctggttccaatgctgagctagtatacagcattgct
gggggaaatccacatgaccttttttacatctctccatctaatggtgagatcacactaaca
aaggaactaactcggaaacatagtggtctacatcgactggtggtaaaagtgagcgacaga
ggcaaaccatcccgccatgctattgccttggtacacatttacgtaaatgaaaccattgct
aatgtaagtcatgtggaggcacttgtggggcatagcttgtacaccccactggacatggac
attgcaggtgacccagattatggtttggctgcccagagaagcaacattgtatatggcagt
ttagcaggagtggcgggagttgtcactgtgattgttgtggtggtcttcatcaggcatcgg
ctccaaagagaagcaaagagtggttatcaggctggcaagaaggagaccaaagatttgtat
gcccccaagcaagggccaaaaagtggcaaggggagaaagggtaaaaaaggtaagccacca
aagtcacctaaacctcttggagaggatgaggaagtcagccttcagaagagtctgaaattt
aaccttgatggggtcaatgacagccccaggatccatttgcctctgacatatccacctgga
agccctgacctaggcaggcactaccgttccaattccccattgccatccatccagctccag
gcccagtccccatctgcctcccaaaagcatcaggttgtccaggagctccctgctgccaac
acctttgtggggacaggtggtgatgacaactccaccggctcagaccagtactcggattac
agctacaagaccaatccaccaaaatacagcacaaaaacgctcccccatcgcagagtgacg
ttctccacagccaatcccgtgcaagatcagcacgactcctctcagcaaagttactatgac
agtggcttggaggagtccgagacccccagcagcaagagttcttcaggaccccgtatcggc
cccctcgccctgcctgaggaccactatgaacggaccacccctgatggcagcatcggagag
atggaacacccggaaactgatattcgctcattgcctgacgttgccatgacgggaaactgc
agccaggagtgcagcgagctcggtcactcagatgcctgttggatgcccggtcagccttcg
cccgtccgcaagacacgcaacccccctaaactgtccacgtttgtgccttatcaggagagg
gggagcttgggacgcctggccaatgggagcgtgaggttgggaggagaggagaacaggcca
cgcctcccaccttcccgtagtgcctactccagtagtgaccacacccccagtgaccacgcc
ccactagaggaggtgcctctgagggtgacatcagagttcccgcccaccagccccccctcc
aatcacgcctcgaaaagagagatatacctgtga
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