Pimephales promelas (fathead minnow): 120482643
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Entry
120482643 CDS
T08155
Symbol
trpa1a
Name
(RefSeq) transient receptor potential cation channel subfamily A member 1a isoform X1
KO
K04984
transient receptor potential cation channel subfamily A member 1
Organism
pprm
Pimephales promelas (fathead minnow)
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pprm04040
]
120482643 (trpa1a)
Ion channels [BR:
pprm04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
120482643 (trpa1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ank_2
Ank
Ank_3
Ank_4
Ank_5
Ion_trans
DUF3447
Motif
Other DBs
NCBI-GeneID:
120482643
NCBI-ProteinID:
XP_039533110
LinkDB
All DBs
Position
Unknown
AA seq
1122 aa
AA seq
DB search
MTKKGAEMTHISKTESKSRQQSIDSVMDGDESNQISANVFEWAKKGNAVALEKHSKYLDI
RDHIGASPLHYASSKGYFRIIRLIAQVVGQQELNARDEEGDTPLHWAVQKDQPGICSVLL
TLGADPNILNNSQQSPLHMAVSLGKNLVVEQLVSHKQTDVNLEGDMGNTPVILAASLDNH
EALVILHKHDAKFCRQNKLGLFPIHAAAFSGAKKSMEVILLKGEECGMSIESHINYVDKS
CSSPLHLAVRGGNLDIIKLCITYGAKIDQQQCDKSTALHFACSQGAIEVVKVMLSSYHKV
CDLINITDGANQTPLHKAAIFDHFELSEYLISQGADIDFVDCKGHSPLLLATSCGAWKTV
NLLLSHGADLKKKDTSGCNFLHLAILQPRGLKNLPTEVLQHESVRKLLNDEDIEGCTPLH
YACRLGIPESVKNMLGLEVSLDQKCKQKKSALHFAAEFGRINTCHRILEMVTDTRLLNEG
DEKGLTPLHLASREGHVKVVELLLRKGALFHSDYRGWSCLHHAASEGYTQTMDTLLTSNI
KLLNKTDGEGVNTALHLAARAGHVAAVRLLLYKGAKIILNKNDASFLHEAVHNGRKELTN
TVIESDRCEEAMTTYKPNSAKRCIVMDMIEFLPESFIHLLDTCIKESDEDVNSTNYYIEY
NFRWLQHPLQNLKKAGIKKDTTYKPLSALNAMVKFNHVSLLTHPVCKKYLEMKWNAYGIK
AHLLNMTVYALGVFPLTYLIVNLKPTLVTGRNVTSVNMVCTSMYKQSYVTTACMLLVLVM
NMYAVGKEILQIFQQRLNYLRDLSNYMDWSAAICALLFVVPLLMNTKSSWHWQAGALAAL
ASWINLLLYLQRFERIGIYVVMFREISRTLLSIILLFFYLILGFALSFYALMIEQQHFGR
MFLSLLQTFVMMVGEINYQDNFLKPYLQGDLPFPNLTLAIFIWFVLLVPILLMNLLIGLA
VGDIAEVQTNACLKRIAMQIDLHTNLEERLPYWFMKRVDQVSIREFPNRCFRGKKRWFFS
GNEVRKSRTRLSPTSHQLSPLEREITKQKYRLKEISETMEKQHNLLKLIVQKMEISSEAE
EHDGPPVFQELKEKLLSKSKWGPLLRAVTARKKRGCSFMKTS
NT seq
3369 nt
NT seq
+upstream
nt +downstream
nt
atgactaaaaaaggtgcagaaatgacacacatctccaaaacagagtcaaaatctagacag
cagtcaattgacagtgtcatggatggggatgagagcaaccagatatctgcaaatgtgttt
gagtgggctaagaaaggaaacgcagtggctctggagaagcactccaagtacctggacata
cgcgaccacatcggtgccagcccactgcactacgcctcatcaaagggatactttcgcatc
atcagacttattgcgcaggtcgttggacaacaagagctcaatgccagggatgaggagggg
gatacacctcttcactgggccgtgcagaaggaccagccagggatctgctctgtgctgctg
actctgggagcagatcctaacatcctaaataacagccagcagtcaccgctacatatggca
gtcagcctgggcaaaaatctggtggtagagcaacttgtctcacataaacaaactgatgtg
aacttggaaggggacatgggaaacacccctgtcattttagctgcttctttggataaccat
gaggctctggttatattgcacaaacatgatgcaaagttctgtcgtcagaacaaacttgga
ctttttccaattcatgctgctgctttttctggagctaagaaatccatggaggtcattctt
ctgaaaggagaagaatgtggtatgtccattgaaagccatataaactatgtggataaatct
tgcagcagtccactccacttggctgtacgtggggggaatctcgacatcattaaactctgc
attacatatggagcaaaaattgatcagcagcagtgtgataaatccactgctctccacttt
gcatgtagtcaaggtgccattgaggttgttaaagtcatgctctcgtcttatcataaagtg
tgtgaccttatcaacatcactgatggggccaaccagacacctctacataaagcagcgatt
tttgatcactttgaactgtccgagtaccttatatcacagggtgctgacattgactttgtg
gactgcaaaggccattctccactacttctggcaacaagttgtggagcatggaaaactgtc
aatctactcctctcccatggagctgatctgaagaaaaaagacacatctggatgcaacttc
ctgcatctggccatcctgcagcccaggggtctgaaaaacctgccaacagaggtactgcag
cacgagagtgtgagaaaactcctcaatgatgaggatattgagggctgtactcctctccat
tacgcctgtagactgggaatcccagagtctgtgaagaacatgctgggattagaggtctcg
ctggaccaaaagtgcaaacagaagaaatctgcacttcattttgcggccgaatttgggagg
atcaacacatgtcacaggattctggagatggtgacagacaccagactgctgaatgaggga
gatgagaaaggactgacacctctgcatctggcgtcgcgtgaaggtcacgttaaagtagtt
gagcttctcctacgcaagggggcgctgtttcacagtgattatagaggatggtcatgcctg
catcatgctgcatctgaaggatacacacagaccatggacactttgctgacgtcaaacatc
aaacttctaaacaaaaccgacggagaaggagtaaacaccgcactgcatctggctgctaga
gcaggtcatgtggcagcagtgagacttctgttatacaaaggggccaagatcatcctcaat
aagaatgatgcttctttcttgcacgaggctgtacataacgggaggaaggagctcactaac
actgtgattgagagtgacagatgtgaagaagcgatgacaacgtacaaaccaaactcagca
aaacgctgcattgtcatggacatgattgagtttcttccagagtcctttatacatcttcta
gacacttgcataaaggaatcagatgaagacgtgaacagcaccaattactatattgagtac
aacttccgttggcttcagcatccactgcaaaatcttaaaaaagcaggcattaaaaaagac
accacctacaaacctcttagtgcattaaatgctatggtgaaatttaatcatgtcagcttg
ctgacccacccagtctgcaagaaatatttggagatgaaatggaatgcctatgggatcaaa
gcacatctgctcaatatgactgtctatgcgctgggggtgtttcctttaacttacctcatt
gtgaacctgaagcccacattggtcacaggaagaaatgtcacatcagtcaacatggtctgc
acttccatgtacaagcaatcatatgtaacaacagcatgcatgctcttggttcttgttatg
aacatgtatgcagttgggaaagagatcctgcaaatttttcaacagcggttgaattatttg
cgagatctgtcaaactacatggactggtccgctgcgatctgcgctctgctgttcgtggtg
ccgttgctgatgaacaccaagagttcctggcactggcaggcaggagcactggcagctctg
gcctcctggataaatctgctcctctatctccagcgttttgaacggattggtatatatgtg
gtcatgtttcgggagatctcacggacactgctgagcattatattgttgttcttctacttg
atattgggatttgctttgtccttctatgccttgatgatcgaacagcaacattttggaagg
atgttcctgtcactgctgcagacctttgtcatgatggttggagaaatcaactaccaggac
aatttcctgaaaccctacctgcaaggagaccttcctttcccaaacttgacattggccatc
tttatttggtttgtcttactcgtgcctattcttctcatgaacctgctgattggtttggct
gttggtgacatagcagaggttcagacaaacgcatgtttgaagaggattgcaatgcagatt
gatcttcacactaatctggaggagaggcttccctattggtttatgaagcgggtggaccag
gtctccatcagagaatttccaaatagatgcttcagaggaaagaaaagatggtttttcagt
gggaatgaggtgaggaagtccaggacccgtctcagtcctaccagccaccagttatctcca
ctggaacgggagataaccaaacagaaatataggctgaaggagatatcagagactatggaa
aagcaacacaacctgctaaagctcatagtgcagaagatggagatcagctcagaggccgaa
gaacatgacggacccccggtttttcaggagctgaaagagaaacttctcagcaagagcaaa
tggggtccgttgctcagggcagtgaccgccagaaagaagcgaggctgcagtttcatgaaa
acgtcatga
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integrated database retrieval system
