Pimephales promelas (fathead minnow): 120482950
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Entry
120482950 CDS
T08155
Symbol
rxrga
Name
(RefSeq) retinoic acid receptor RXR-gamma-A isoform X1
KO
K08524
retinoid X receptor alpha
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm03320
PPAR signaling pathway
pprm04148
Efferocytosis
pprm04920
Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
120482950 (rxrga)
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
120482950 (rxrga)
03320 PPAR signaling pathway
120482950 (rxrga)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pprm03000
]
120482950 (rxrga)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
pprm03310
]
120482950 (rxrga)
Transcription factors [BR:
pprm03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
120482950 (rxrga)
Nuclear receptors [BR:
pprm03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
120482950 (rxrga)
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
Hormone_recep
zf-C4
Nuc_recep-AF1
tRNA_bind_3
Motif
Other DBs
NCBI-GeneID:
120482950
NCBI-ProteinID:
XP_039533648
LinkDB
All DBs
Position
Unknown
AA seq
441 aa
AA seq
DB search
MDNNDTYLHLSSSLQVTHGHLSSPPSQPPLSSMVSHHHPSIINGLGSPYSVITSSSLGSP
SASMPTTSSMGYGALNSPQMNSLNSVSSSEDIKPPPGLAGLGSYSCGSPGSLSKHICAIC
GDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYTCREIKECLIDKRQRNRCQYCRYQKCLAM
GMKREAVQEERQRGREKSDNEVESSCSFNEEMPVEKILDAELAVEPKTDAYMESSTGNST
NDPVTNICQAADKQLFTLVEWAKRIPHFSDLPLDDQVILLRAGWNELLIASFSHRSVTVK
DGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKTELGCLRAIVLFNPDAK
GLSNPSEVEALREKVYASLEAYTKHNYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKL
IGDTPIDTFLMEMLEAPHQIT
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atggataataacgacacatatctgcatcttagttcttctttgcaggtaacacatggtcat
ctgagctctcctccgtcccagcctcctctcagctctatggtgtcccaccatcacccctcc
atcatcaacggtctagggtcgccatactcagtcatcacttcctcctccctgggttcgcct
tcggcgtccatgcccaccacctccagcatgggttatggagcactcaacagtccacagatg
aactctctgaacagtgttagcagctcagaagacattaaacctcctccaggactggcggga
ctcggcagttactcctgcggcagcccggggtccctctccaaacacatatgtgccatctgt
ggagaccgatcttcagggaaacattatggtgtttacagctgtgaggggtgcaagggcttc
ttcaagagaaccatccggaaagacctcacatacacgtgtcgagaaattaaggagtgtctg
atagacaagcgccagcggaaccgctgccagtactgccgctatcagaagtgtctggccatg
ggcatgaagagagaagcggtgcaagaagagagacagcggggtcgggaaaagagtgataat
gaggtggagtccagttgcagctttaatgaggaaatgccagtggagaagattctggacgct
gagcttgcagtggaacccaagaccgacgcttacatggagtccagcacgggcaactcgaca
aatgacccagtgaccaacatctgccaggccgcagacaagcagctcttcactcttgttgag
tgggctaaaagaatcccgcacttctctgacctccctctggatgaccaggtcatcctgctt
cgagcaggttggaacgagctgctcatcgcttcgttctcacaccgttcggtgacggttaaa
gacgggatccttctggccaccggcctacatgtccaccgcagcagtgctcacagcgccggg
gtgggctcgatatttgacagggtattaacagaactggtgtctaagatgaaggacatgcag
atggacaagacagagctgggctgtctaagagctatcgtcctctttaacccagatgcgaaa
ggattgtcaaacccatcagaggtcgaggcattacgggaaaaggtgtacgcctcactggag
gcctataccaaacacaattaccccgatcagcccggcaggtttgccaagctgctcctgcgt
ctgcccgctctgcgctccataggactgaagtgcctggagcacctgttcttcttcaaactt
atcggagacacacctatagacactttcctcatggagatgttggaagcaccgcatcaaatc
acatga
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