Pimephales promelas (fathead minnow): 120483092
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Entry
120483092 CDS
T08155
Symbol
col2a1a
Name
(RefSeq) collagen, type II, alpha 1a isoform X1
KO
K19719
collagen type II alpha
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm04510
Focal adhesion
pprm04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120483092 (col2a1a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
120483092 (col2a1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pprm00536
]
120483092 (col2a1a)
Glycosaminoglycan binding proteins [BR:
pprm00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
120483092 (col2a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
SNARE
Motif
Other DBs
NCBI-GeneID:
120483092
NCBI-ProteinID:
XP_039533916
LinkDB
All DBs
Position
Unknown
AA seq
1491 aa
AA seq
DB search
MFRLVDSRTLLLLVATQCVLLSLVRCQQEDDQEELGSCIQDGQLYADHTVWKPEPCRVCV
CDSGAVLCDEVICEDLRECANPIIPPGECCPICPAETDEPIESIGAKGQKGEPGDIADVV
GPRGPAGPMGPPGEQGTRGEKGPKGEKGNVGPRGRDGEPGTPGNPGPPGPPGPPGPNGLG
GNFAAQMAGGFDEKAGNAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGNPGETGEPGPA
GAIGPRGPSGPPGKPGSDGEAGKNGKPGERGPPGPQGARGFPGTPGLPGIKGHRGHPGID
GAKGESGAAGAKGEAGSNGESGAPGPMGPRGLPGERGRPGATGAAGARGNDGLPGPAGPP
GPVGPAGAPGFPGSPGSKGEAGPTGARGPEGAQGPRGEAGTPGSPGPAGASGNPGTDGIP
GAKGSAGASGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGIPGFKGEAGPKGERGVV
GPQGAPGPSGEEGKRGPRGEPGSAGPLGPPGERGAPGNRGFPGQDGLAGAKGAPGDRGVP
GLTGPKGGTGDPGRTGEPGLPGARGLTGRPGDAGPQGKVGAPGSAGEDGRPGPPGPLGAR
GQPGVMGFPGPKGANGEPGKTGEKGLIGRPGLRGLPGKDGETGAAGPPGPAGAVGERGEQ
GQPGPSGFQGLPGPTGAPGEPGKPGDQGVPGEGGAAGATGPRGERGFPGERGGAGPQGLQ
GPRGLPGTPGTDGPKGAIGPAGSAGSQGPPGLQGMPGERGAVGIAGAKGDRGDSGEKGPE
GAPGKDGSRGLSGPIGPPGPAGPNGAKGETGAIGPNGAPGSRGAPGDRGEIGAPGPAGFA
GPPGADGQPGIKGEQGEAGQKGDGGAPGPQGPSGAPGPVGPTGVTGPKGARGAQGAPGAT
GFPGAAGRVGTPGPNGNPGPAGPAGAPGKDGPKGVRGDAGLPGRAGDAGLRGPPGAPGEK
GDSGEDGPPGPNGPSGPAGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGASGSSGDR
GPPGPVGPPGLTGPAGETGREGNPGSDGPPGRDGAAGVKGERGNTGPIGAPGAPGAPGAP
GSVGPVGKQGDRGENGPQGPAGPPGSAGARGMVGPQGPRGDKGEAGEAGERGQKGHRGFT
GLQGLPGPPGSPGDQGAAGPAGPSGAKGPAGPVGPAGKDGSNGQPGPIGPPGPRGRSGEI
GPIGPPGNAGPPGPPGPPGPGIDMSAFAGLAHTEKGPDPLRYMRADEASSSLRQHDVEVD
ATLKSINSQIEDIRSPDGSRKKPARSCRDLKLCHPEWKSGDYWVDPNLGSSADAIKVFCN
METGETCVKPSTPKIPRKNWWSSKGKGLKHVWFGESMNGGFHFSYADSSQTPSTTSIQLN
FLRLLSTEASQTITYHCKNSVAYMDQATGNLKKAVLLQGSNDVEIRAEGNSRFTYGVVED
GCKKHTGQWAKTVIEYKTQKTSRLPIVDIAPMDIGGADQEFGVDIGAVCFL
NT seq
4476 nt
NT seq
+upstream
nt +downstream
nt
atgttcagattagtggattcacggactctcctgctacttgtagcaacccaatgcgttttg
ctgtcccttgtaagatgtcaacaagaagatgaccaggaagagttaggcagctgcatccaa
gatggccagctgtacgcagaccatactgtatggaagccagaaccatgccgtgtctgcgtg
tgcgactctggggcagtgctgtgtgacgaggtcatctgtgaggacctgagagaatgtgcc
aatcccatcattccacccggagagtgctgtcccatctgcccggctgaaaccgacgagcct
atcgagtcaattggtgcaaagggacagaaaggagaaccaggcgacattgcagatgtagtt
ggaccaagaggacctgctggcccaatgggacccccaggagagcaaggaacacgtggcgag
aaaggacctaagggtgagaagggaaatgttggcccaagaggaagagatggcgaacctggt
acacctggaaacccaggaccccctggacctcctggaccaccaggacctaatggacttgga
gggaactttgctgctcagatggctggtggttttgatgagaaggcaggaaatgctcagatg
ggtgtgatgcagggaccaatgggtccaatgggtccccgtggtcctcccggtccctctgga
gcacctggcccacaaggtttccaaggcaaccctggagagactggtgaacccggccctgct
ggtgccattggacctcgtggcccatctggtcctcctggaaaacccggaagtgatggtgag
gctggcaaaaatggtaagcctggtgagcgtggacccccagggcctcagggagcccgtgga
ttccccggaacacctggccttcctggaatcaagggacacagaggacacccaggtattgat
ggagctaaaggagagtccggtgctgcaggtgctaagggtgaggcaggttcgaatggtgag
agcggtgcgcctggaccaatgggtccacgtggtctgcccggtgagagaggtcgtcctggt
gcaactggtgctgctggtgcccgtggtaatgatggtctgcctggtcccgctggtcctcct
ggtcctgttggtcctgctggtgctccaggtttccctggatcccctggttctaagggtgaa
gctggtcccactggagctcgtggacctgagggtgcacaaggaccccgtggagaggccgga
acacctggatcacctggacctgctggtgcatctggtaaccctggtactgatggtattcct
ggagccaaaggatctgctggtgcttctggcattgctggtgcccctgggttcccaggaccc
cgtggcccgcccggacctcagggagctactggacctcttgggcctaaaggacaatctgga
gaccctggtattccaggatttaaaggcgaggctggacccaagggagagcgtggcgttgta
ggacctcagggagcccctgggccatctggagaggaaggaaagagaggaccaagaggagag
cctggttctgccggacctcttggaccccctggagagagaggagctccaggtaaccgtgga
ttccctggtcaggatggtctagctggagcaaagggtgcacctggtgatcgtggtgttcca
ggtttgaccggaccaaaaggaggaactggagatcctggccgcacaggcgagcctggtctt
cctggagccagaggtcttactggacgccctggtgatgctggacctcaaggaaaagttgga
gcacctggttctgctggtgaagatggacgccctggtcctcctgggcctctgggagctcgt
ggtcagcctggagtgatgggattccctggacctaagggagccaatggtgaacctggaaaa
actggagagaaaggacttattggacgacctggtcttagaggtttgcctggtaaagatgga
gagactggagctgctggtccacctggccctgctggtgctgttggtgagagaggagagcaa
ggtcagcctggtccatctggcttccagggtctgccaggacctactggagcccccggagag
cccggtaaacctggtgaccagggtgttcctggagagggtggtgctgccggtgccactgga
ccaagaggtgaacgtggattccctggtgagagaggaggcgctggccctcagggtctccag
ggaccaaggggacttccaggaactcccggaactgatggaccaaagggtgcaattggacca
gctggtagtgctggatctcagggtcctcccggtctgcagggcatgcctggtgagagagga
gctgttggaatcgctggagctaaaggtgacagaggtgacagtggagagaaaggacctgaa
ggtgctcctggcaaagatggttcaagaggtttgtctggtccaattggtccacctggtcct
gctggtccaaatggcgcaaagggtgaaactggtgccattggcccaaatggtgctcctggt
tctcgtggtgcccctggtgatcgtggtgagattggtgcacccggacctgctggctttgct
ggaccccctggtgctgatggtcaacctggaattaagggagagcagggtgaggcaggacag
aaaggtgatggtggagcccctggaccccaaggaccatccggagcacctggcccagtgggc
ccaactggtgttacaggacccaagggagcacgtggagcccaaggagcccctggtgccact
ggtttcccaggtgctgcaggaagagttggaacacctggccccaatggtaaccctggtcct
gctgggcctgcaggtgctcctggtaaggatggtcctaagggagttcgtggtgatgccggt
ctcccaggcagagcaggagatgctggactgcgtggacctcctggtgcacctggagaaaag
ggagattctggagaggatggtcctcctggtcctaatggtccttctggccctgctggtctt
gctggtcagcgtggtattgttggtttgcctggtcagcgtggtgaaaggggtttcccagga
ctcccaggaccctctggtgagcctggcaaacagggagcatctggttcttctggtgaccgt
ggacctcctggccccgttggaccacctggattgactggacctgctggcgagacaggacgg
gagggtaatcctggatctgatggtccacctggtagagatggtgctgctggtgtgaagggt
gagcgtggtaacactggcccgattggtgctcctggagctcctggtgcccctggtgctcct
ggctccgttggtccagttggcaaacagggagacagaggagagaatggcccacaaggacct
gctggcccccctggatcagctggagctagaggcatggttggaccccaaggacctcgtggt
gataagggtgaggcaggagaagctggagaaagaggtcagaagggacacagaggattcact
ggtctgcagggtctgccaggacctccaggttctcctggagaccagggtgctgccggacct
gctggaccaagtggcgctaagggaccagccggacctgttggaccagctggtaaggacggt
tctaacggtcagcctggacccattggcccacctggacctcgtggacgctctggagagatt
ggcccaattggtccacctggtaatgcaggacctcctggtcctcctggtccccctggccct
ggcattgacatgtctgccttcgctgggttggctcatactgagaaaggacccgatcctctg
cgttacatgcgtgccgacgaggcctccagctctcttagacaacatgatgtggaggtggat
gccacactgaagtcaatcaacagccaaatcgaggacatccgcagcccagacggttcccgc
aagaaacctgcacgctcctgccgagacctgaaactctgccaccctgaatggaagagcggt
gactactgggttgatcctaaccttggtagcagtgctgatgccatcaaagtgttttgtaat
atggagactggagagacctgtgtgaagcccagcactcccaaaatcccacgcaagaactgg
tggagcagtaagggcaaggggctgaagcacgtgtggtttggagagagcatgaatggtgga
ttccacttcagctatgctgatagcagccagactcctagtacgaccagcatccagttgaac
ttcctgagactgctgtctactgaggcctctcagaccatcacctaccactgcaagaacagc
gtggcttacatggaccaagccacaggaaacctgaagaaggccgttctgctgcagggctcc
aatgatgtggagatcagagcagagggcaacagccgctttacatatggcgtggttgaggat
ggctgcaagaagcacactggtcagtgggccaagactgtgattgagtacaaaactcagaag
acatccaggctgcccatcgtggacattgctccaatggacatcggaggagcagatcaggag
tttggagtggacattggtgcagtctgcttcttgtaa
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integrated database retrieval system
