Pimephales promelas (fathead minnow): 120483247
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Entry
120483247 CDS
T08155
Symbol
hfm1
Name
(RefSeq) probable ATP-dependent DNA helicase HFM1 isoform X1
KO
K15271
ATP-dependent DNA helicase HFM1/MER3 [EC:
5.6.2.4
]
Organism
pprm
Pimephales promelas (fathead minnow)
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pprm03036
]
120483247 (hfm1)
Enzymes [BR:
pprm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
120483247 (hfm1)
Chromosome and associated proteins [BR:
pprm03036
]
Eukaryotic type
Meiosis-specific proteins
Others
120483247 (hfm1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sec63
DEAD
SNRNP200_wHTH
ResIII
Helicase_C
DEXQc_Suv3
AAA_22
Motif
Other DBs
NCBI-GeneID:
120483247
NCBI-ProteinID:
XP_039534146
LinkDB
All DBs
Position
Unknown
AA seq
1431 aa
AA seq
DB search
MLESEEGVSSLDNLFYDRPVIHKVKPLCEGQGSWIVDAPPSFSQIPATQDIQGEAAHLSS
FSYSQRSKKFLAPAQKLFHNPNENVQGQTVKSYELEESVLWTHEPSRERNQAVGMKGFVE
SRPLPTASAPPFKTRLFRAPTRSISGNGEDGIPNHMMSTNDTGFRGQGAMTTSGPQTSHA
FATISPFNGLAQTEQTCDVPAKTNHDLYLGFEPAEFEGKKSSGKGTLRSVSEIPAKFRSV
FKEFPYFNYVQSQALNDVLFTSKNFVACAPTGSGKTVLFELAIVRLLIEATEPWHNVRAV
YMAPIKALCSQRYEDWKQKFGPLGLNCKELTGDTEIDDIFEIQDAHLIFTTPEKWDSMTR
RWKDNCLLPSVRLFLIDEIHVVKDKTRGATLEVVVSRMKTMHSHHLAVNPESKASVRFVA
VSATIPNIHDVSEWLSDESGPATCLKMDDSHRPVKLRKVVLGFPCGSNQNEFKFDLSLNY
KMANIIQTYSDKKPTLVFCSTRKGVQQSAAVIAKDARFIMSIDHKQRLMKYANSLLDAKL
RDIFVCGIGYHHAGMDVSDRKLIEKAFTVGDLPVLFTTSTLAMGVNLPAHLVVIKSTLHY
VGGACEEYSEADLLQMIGRAGRPQFDTTATAVIMTRSQTKDKYTNFLSGIDSIESSLHTN
LVEHLNAEIVLHTISDVNMALDWIRSTFLYIRALKNPKHYGFPPELDKCGIETKLQELCL
KNLNSLASFNLITMDEDINIKPTETGKLMARYCVAFDTVKQFSRVTGTETLPELIEMISK
GKEFSDVQLRVNEKKTLNMLNKDKNRNTIRFPMDGKIKSNDMKVNCLIQAQLSCIPIQEF
GLIQDTGKIFRNGNRVSRYLTEFLSHHSKSNFSAQLNSLILAKCFRAKLWENSSYVSRQL
ERIGLQLATAMVNAGLTTFSKIEQTSPRELELVVNRHPPFGNQIKEAVSKLPKYEVSLEQ
IPRYSLSTAEIVVTVKMQNFMELASKRTAPDRHYVTLIIGDCDNNVVFQQKIMDTMLLRS
GSWSRRIEVTRTPKGEELSVHLISSEYVGLDVQRNFSAYYSGAKRFREESSIRKSPTWKM
QMILDTGKRQGPTSTTCTSSDRDQFAPNTRQCHHLCKNKELCGHECCKVGVVKRAQSCFS
SYLNNLKMRNERLCETPVKRLKMMMNNGTAAVSMQQFSYKPKDALPAAKKFEGSQCYTQS
TYEIKELEASFVTPHENLSSYHDGYNDELEDFYSETGDLALEHPPPSALHQSMEASGVSL
HSQFKPRSGGQMHRVSPNKASVYSVHANPDHITDNDNLWSGSLDVTFDLGVNDWDDFDDG
NLVDASEVCYKSQICNLMTDHDQPTTSAQAFEVLPQRIPPMAVTPQTAVRSERCMNSLSN
QSQPKTPSVQRRFDFFSSTDAALEENTSSRDHTEDISNETSVFLGMFDGLF
NT seq
4296 nt
NT seq
+upstream
nt +downstream
nt
atgttagagtctgaagaaggcgtttcgtcgctggataacctgttttatgacaggccagta
attcataaagtgaaaccattatgtgagggacaaggctcctggatcgttgatgctccaccc
tcattttcacaaattcctgcaacacaagacatccagggagaggcagcacacctttcctca
tttagttactctcagagatcgaagaaatttctggctcctgctcaaaaactatttcacaat
cctaatgaaaatgtccaaggtcagactgtgaaatcatatgagcttgaggaatctgttttg
tggacccatgaaccctctagagaaagaaatcaggctgtcggcatgaagggttttgtggaa
tcgaggcctttacctactgccagtgctcctcccttcaagactcggctgttcagagctcct
acaagaagcatctcagggaatggtgaagatggtatcccaaatcatatgatgtcaacaaat
gacactggtttccgtggtcagggtgctatgacaaccagcggcccacagacttcacatgct
tttgctaccattagtccctttaatggcttggcccaaacagaacaaacatgtgatgtacct
gcaaaaacaaaccatgatctttatcttggatttgaacctgcagaatttgaagggaaaaaa
tcatctggaaaaggaacacttcgctcagtctctgaaattcctgctaaattcaggagtgtg
tttaaagaattcccttactttaactatgtgcagtcccaggcattgaatgatgttctgttc
acctctaaaaattttgttgcctgtgctcccacggggtctgggaaaacggtgctctttgag
ctggccattgttcgactactgattgaggctactgagccctggcacaatgtcagagctgtg
tacatggcaccaattaaggctctttgcagtcaacgatatgaagactggaaacagaagttt
ggacctcttggactaaactgcaaggagttaactggagacacagaaattgatgacattttt
gaaatccaggatgctcatctaattttcacaactccagaaaaatgggacagcatgacaagg
aggtggaaggataactgtttattgccatctgttcgtctcttcctcattgatgagatacat
gtggtgaaagacaaaacccgtggagcgactcttgaggttgtggtcagcagaatgaaaacc
atgcactcgcaccacctagctgtaaatccagaatcaaaagcatccgtgagatttgtggct
gtctcagctaccatcccaaacatccacgacgtatctgaatggctttcggatgagtcagga
cctgccacttgtctgaagatggatgatagtcacaggccagtgaaactgaggaaagtggtg
cttgggttcccttgtggaagtaatcagaatgaatttaagtttgatctttctctcaactac
aaaatggccaacattattcagacctactctgataaaaaaccaacccttgtgttttgctcc
acaagaaaaggagttcaacagtcagctgccgtgattgccaaggatgccaggttcattatg
agtattgaccacaaacaaagactgatgaaatatgcaaactctctgcttgatgcaaaactc
agagacatatttgtttgtggcattggatatcatcatgctggcatggatgtgtcagacagg
aaattgattgaaaaagcatttacagtgggtgacttgccagtgttatttacaaccagtacc
ctagccatgggtgtgaatttgccagcccatcttgtggtaataaaatccacattgcactat
gttggtggtgcatgtgaagagtacagtgaagctgacctgttacagatgattggaagagct
ggcagaccacagtttgatacaacagcgactgcagtgatcatgacccggtctcagacaaag
gacaaatacacaaatttcttaagtggcatagacagcatagagagcagcttgcatacaaac
ttggtggagcacttgaatgcagagatagttctccacaccatatctgatgtgaacatggct
ctagactggatccgctccacattcctgtatatccgtgctttgaaaaaccccaagcactac
ggtttccctcctgagcttgacaaatgtggaattgagactaaattacaagaactgtgcttg
aagaacctcaactctttggcttcttttaacctgattaccatggatgaagacattaacatc
aagcccacagagactggaaaactcatggccaggtactgtgttgcctttgacactgttaag
cagttcagtagggtgactggaacagagactttacctgagttgattgaaatgatatcgaag
ggtaaagaatttagtgatgtgcaactgagagtaaatgagaagaaaaccttgaacatgctg
aacaaggataagaacagaaacaccatcaggtttcctatggatggaaagatcaaaagtaat
gacatgaaagtgaattgtctgattcaagctcagctcagctgcatccccattcaggagttt
ggactcatacaggacactggaaaaatattccgaaatggaaatagagtcagcagatatctg
actgagtttctcagtcatcactccaaatcgaatttttcagctcaactcaactctttaatt
cttgccaaatgttttcgagctaaactgtgggagaactcgtcttacgtctccagacagctt
gagaggataggattacaactcgctactgctatggtgaatgcagggcttacaacattcagc
aaaattgagcagactagtcccagagaactagagctagttgtgaaccgacaccctccgttt
gggaaccagattaaggaagctgtcagcaaacttccaaaatatgaagttagtttggaacag
attcctcgatacagtctgtccacagctgagattgtggtcacagtgaaaatgcagaatttt
atggagttggcatcgaaacggactgcaccagaccgtcattatgtaactctcattattggg
gactgtgacaataatgtagttttccagcagaaaatcatggacacaatgctcttgaggtct
gggagctggtcaaggagaatcgaggtgacaagaacacctaagggagaggagctcagcgtt
catttgatcagctctgaatatgtgggtctggacgtacagcggaacttcagcgcttactac
tcaggagcaaagaggtttagagaggagtcctccatcagaaagagccctacatggaaaatg
cagatgattctcgacacagggaagagacaaggccctacgtcgacaacttgcacttcttca
gacagagatcaatttgctccaaacacgagacagtgccatcatctctgcaaaaacaaggag
ctctgtggacatgagtgttgcaaagttggagtcgtgaaaagggctcagtcctgtttctcc
tcataccttaacaatctgaaaatgagaaatgagagactctgcgagactcctgtgaaacgt
ttgaagatgatgatgaataatggaacagcagctgtaagcatgcagcagttctcatacaaa
cccaaagacgcactgcctgctgccaagaagtttgagggaagtcagtgttacactcaaagt
acatatgaaatcaaggagttagaggccagttttgtcactccacacgagaatttgtcatca
taccatgacggttataatgacgagcttgaagacttctattctgaaactggagacctagca
ttggaacatcctccaccttctgctttacatcaaagtatggaagcttctggggtttcgctt
cacagtcagttcaagccacgcagcggtggacagatgcacagagttagccctaataaagcc
agtgtttattcagtccatgcaaacccagaccacattactgacaatgataacctctggtct
ggttccctggatgtgacctttgacctgggagtgaatgattgggatgattttgatgatggt
aacctggttgatgctagtgaggtgtgctataaatcccaaatatgtaacctgatgacagac
cacgatcaacctacaacttctgcccaagccttcgaagtcttgccacaaaggatcccacca
atggctgtgacaccccagactgctgtgcgctcagaaagatgtatgaactccctctcaaac
cagagtcaacccaaaacaccttcagttcaaagaagatttgatttcttctcaagcacagat
gcggctctagaggaaaacacatctagcagggatcacacagaggacatcagcaatgagacc
agtgtttttctcggtatgtttgatggccttttttag
DBGET
integrated database retrieval system
