Pimephales promelas (fathead minnow): 120483703
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Entry
120483703 CDS
T08155
Symbol
smarcc1b
Name
(RefSeq) SWI/SNF complex subunit SMARCC1b isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
120483703 (smarcc1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pprm03021
]
120483703 (smarcc1b)
03036 Chromosome and associated proteins [BR:
pprm03036
]
120483703 (smarcc1b)
Transcription machinery [BR:
pprm03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
120483703 (smarcc1b)
Chromosome and associated proteins [BR:
pprm03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
120483703 (smarcc1b)
PBAF complex
120483703 (smarcc1b)
GBAF(ncBAF) complex
120483703 (smarcc1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_1
SWIRM
SWIRM-assoc_3
Myb_DNA-binding
Myb_DNA-bind_6
DUF919
Motif
Other DBs
NCBI-GeneID:
120483703
NCBI-ProteinID:
XP_039534813
LinkDB
All DBs
Position
Unknown
AA seq
965 aa
AA seq
DB search
MAAVGPTTSQASCSFSLSRRMDGGPCSKFWESPEIISQMETVRSWIGKHYKKYVQTDAPS
SKSLSGLVIQLLQFQEETFGRRANNPSFTKLPAKCFQDLRPGGALCHILGSVYKFKTEQG
WRRFDFQNPSRVERNVEMFVCVEKTLIQNNLLSRPVVYLSPDLEQKQTLKLKDIVVRHQG
TVTEERSQATHQVYPSSSTADEEEWFRPVMRLDRHVMVHWGMCPDSYDSLKSANDIDGEV
EEPPNPDRCLKVHTRWILDTDTYNEWMNEEDYEIDENGIIMSFRRRIYQSTEEQKPVKKR
RRSPSPPSSESKKKGGKKSLGVYKRRGQPEEAEPEEDLTKDMEDPTPVPNMEEVVLPKNV
NLKKDSENTPVKGGIMADLDDQEEDLLSGVRDEEEQREFGRGMEGEESAIEQTHHIIVPT
YTSWFDYNCIHHIERRALPEFFNVKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTSASCRR
NLTGDVCALIRVHSFLEQWGLINYQVDAESRPLPMGPPPTPHFNVLTDSPSGLVPLQHRP
LQVSASQHMLHFPEKLREKPSDLQNFGLRIDIYTKKHPKSKGANAGREWTEQETLLLLEA
LEMYKDDWNKVSEHVGSRTQDDCILHFLRLPIEDPYLENSEASMGPLAYQPVPFSQSGNP
VMSTVAFLASVVDPRVASAAAKAALEEFSRAREEAPPELFTASFHKAQRVGHNLDPAFML
QTGGIAGLDDSSEKTDGSGIETMNTEYDQHEKLEGDSILGEGARVKNEEKEESEGERGEE
STAEESFDLCLTQGDGEEMKRRVELELVEVNIATAAASALASAATKAKHLAAVEERKIKS
LVALLVETQMKKLEIKLRHFEELETIMDREKEALEQQRQQLLSERQNFHLEQVKYAELKA
RQTVEPQQQAGATQNSSTAYNPLHQGRPVGSTGAGQMMGAARQPGAPNGMYQTPPSSQAD
GPPPM
NT seq
2898 nt
NT seq
+upstream
nt +downstream
nt
atggctgctgtgggacctacgacaagtcaagccagttgcagcttttcattgagcagaaga
atggacggtggaccgtgctctaaattctgggagagcccggaaataatctcccagatggaa
acagttcgcagttggattggaaagcattataaaaagtatgtgcagactgatgctccctcc
agcaaatctttgtctggtttggtcatccaactgctgcaatttcaggaagaaacatttggc
cggcgagcaaataacccaagcttcacaaaactcccagcaaagtgttttcaggatctgagg
cctggcggtgctctctgtcatattctgggatcggtttacaagtttaaaacagaacagggc
tggagacgcttcgattttcagaatccatccagagtggaacgcaatgtagagatgttcgtc
tgtgtggagaaaactctcatacagaataacttattaagcagacctgtggtgtacctgtcc
cctgatcttgaacagaagcaaacacttaaactcaaagacattgttgtgcgacatcaggga
acagtgacagaggagaggtcacaagccacccaccaggtatacccatcatcctccacagca
gatgaagaagagtggtttcgaccagtcatgcgattggatcgtcatgtgatggtacattgg
ggcatgtgtccagacagttatgactcacttaaatcagcaaatgatatagatggagaagtg
gaggaacctcccaacccagacaggtgcttgaaggtacataccagatggattcttgacact
gacacatataatgagtggatgaacgaggaagactatgaaattgacgagaatgggattatc
atgagtttccgcaggcgtatctaccaaagcacagaggaacagaaacctgtgaagaagcgg
cggcgctccccctctccaccatcctctgagtctaagaagaagggaggaaagaaaagctta
ggggtgtataagaggcgtggccaaccagaagaggcggagccagaagaggatctcactaaa
gacatggaggatcctacgccagtccccaacatggaggaggtcgttctgcctaaaaatgtg
aacctgaaaaaagacagtgaaaacactccagttaaaggaggcattatggctgatttagac
gaccaagaagaggacctgctctctggtgtcagagatgaggaagagcagagagagtttggc
cgtgggatggagggggaggagagcgccatagagcaaacgcatcacatcattgtgcccacc
tatacctcatggttcgactacaactgtattcatcatatagagagacgagctcttcctgag
ttcttcaatgtgaagaataagtccaaaacaccagaaatatatcttgcataccgcaacttc
atgattgatacataccggctgaaccctcaagagtatctgacctcggcctcctgcagacga
aacctgacgggagatgtgtgtgcacttataagggttcattcgtttttggaacaatggggg
ctgataaattatcaggtagatgcagaaagtcgacccctccccatgggaccacccccaacg
ccacactttaacgttcttacagactcaccgtccggacttgtcccactacagcacagaccc
ttacaggtttcagcctctcagcacatgttgcatttcccagagaaattgagagagaaaccg
tctgacctgcagaattttggtctacgcattgacatttatactaagaaacatccaaagagt
aaaggtgcaaatgcagggagagaatggacagaacaggaaacactcttgcttttggaggct
ttggagatgtataaagatgactggaataaagtgtcggagcacgtgggcagccgcacacag
gatgactgtattcttcacttcttgcggttgcccatagaggacccgtacctagagaactct
gaagcctcaatgggtcctctggcttatcagcctgttcccttcagccagtcagggaaccct
gtaatgagcactgttgcttttcttgcatctgtggtggaccctcgagtggcctccgcagct
gccaaggcagctttagaggagttctcgagagcaagagaagaggccccaccagagttattc
actgctagctttcacaaagcacagagagttgggcataatttagatccggcctttatgctc
caaacaggcgggattgcaggacttgatgacagttcagaaaagactgatgggagtggtata
gaaacaatgaacactgaatatgatcagcatgaaaagcttgagggtgacagcatcttggga
gagggagcgcgtgtgaagaacgaggagaaggaagagagtgaaggagagagaggagaggag
agcacagcagaggagagttttgacttgtgcctcacccaaggggatggggaggagatgaag
aggagggtggagcttgagctggtggaggtcaacatcgcaacagctgctgcttcagcactg
gcctctgcagctaccaaagcaaagcacttggctgcagtagaagagaggaagatcaaatct
ctggtggctctgctggttgagactcagatgaagaagttggagatcaaactgagacacttt
gaagagctagagaccattatggatcgagaaaaagaggctctggagcagcagagacaacag
ttgttgtcagagaggcagaacttccacctggagcaggtaaaatatgccgaactgaaggca
cgacagaccgtggaacctcagcagcaagcgggagccacacagaacagcagtactgcatac
aaccctcttcaccaaggacgtccggtgggcagtactggtgctggacagatgatgggtgct
gctcgtcagcctggagctcccaatggcatgtaccaaactccaccgtcatcacaggctgat
ggcccaccccccatgtaa
DBGET
integrated database retrieval system
