Pimephales promelas (fathead minnow): 120484180
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Entry
120484180 CDS
T08155
Symbol
notch1a
Name
(RefSeq) neurogenic locus notch homolog protein 1
KO
K02599
Notch 1
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm04330
Notch signaling pathway
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
120484180 (notch1a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EGF
hEGF
EGF_TEN
EGF_CA
EGF_2
Ank_2
Ank
Notch
NODP
NOD
Ank_4
Ank_5
Ank_3
cEGF
EGF_3
JAG1-like_EGF2
Gram_pos_anchor
Motif
Other DBs
NCBI-GeneID:
120484180
NCBI-ProteinID:
XP_039535148
LinkDB
All DBs
Position
Unknown
AA seq
2443 aa
AA seq
DB search
MNRFLVKLTLLTAASLAAVAQGQRCSEYCQNGGICELKPSGEASCRCPADFVGPKCQFPN
PCSPSPCRNGGVCRARTQGNDVEVTCDCVLGYSDPLCLTPVNHACMSSPCRNGGTCSLLT
LDTFTCRCPPGWSGKTCQQADPCASNPCANGGQCSAFDSHYICTCPPNFHGQTCRQDVNE
CALSSSPCRNGGTCINEVGSYLCRCPPEYAGTHCERLYHPCHPSPCRNGGTCLQTSDTSY
TCTCLSGFMGQTCEHNVDDCTQHACENGGRCIDGVNTYNCHCDKHWTGQYCRDDVDECEL
SPNACQNGGTCHNTIGGFHCVCVNGWTGDDCSENIDDCASAACSQGATCHDRVASFFCEC
PHGRTGLLCHLDDACISNPCQKGSNCDTNPVSGKAICTCPPGYTGSACNQDIDECSLGAN
PCEHGGRCLNTKGSFQCKCLQGYEGPRCEMDVNECKSNPCQNDATCLDQIGGFHCICMPG
YEGVFCQINADDCASQPCLNNGKCIDKINSFHCDCPKGFSGNLCQVDVDECASTPCKNGA
KCTDGPNKYTCECTPGFSGAHCELDINECVSSPCHYGVCRDGVASFTCDCRPGYTGRLCE
TNINECLSQPCRNGGTCQDRENSYTCTCPKGTTGVNCEINIDDCKSKPCDYGKCIDKING
YECVCEPGYTGSMCNINIDDCAINPCHNGGTCIDGVNTFTCLCPEGFRDATCLSQHNECS
SNPCIHGNCLDQINSYRCMCEAGWTGRNCDININECLSNPCVNGGTCKDMTSGYVCTCRA
GFSGPNCQTNINECASNPCLNQGSCIDDVAGFKCNCMLPYTGEVCENILAPCAQRPCKNG
GTCRESEDFLSFSCACPAGWQGQTCEVDINECVRNPCTNGGVCENLRGGYQCRCNPGFTG
DLCENDIDDCAPNPCSNGGVCQDRVNGFMCVCLAGFRGERCAEDIDECVSAPCRNGGNCT
DCVNSYTCSCPVGFSGINCEINTPDCTESSCFNGGTCVDGINSFSCVCLPGFTGNYCQHD
VNECDSRPCQNGGTCQDGYGTYKCTCPQGYTGLNCQSLVRWCDSSPCKNGGSCWQQGASF
TCQCASGWTGIYCDVPSVSCEVAAKQQGVSVVVLCRNAGQCVDVGNTHLCRCQAGYTGSY
CQDQVDECKPNPCQNGATCTDYLGGYSCECVPGYHGVNCSKEINECLSQPCQNGGTCIDL
INTYKCSCPRGTQGVHCEIDIDDCSPAVDPLTGESRCFNGGRCVDRTGGYGCVCPAGFVG
ERCEGDVNECLSDPCDPNGSYNCVQLTNDFRCECRTGYTGKRCETVFNGCKDTPCKNGGT
CAVASNTKHGYICKCQPGYSGSSCEYDAHSCGSLRCRNGATCVSGHLSPRCLCPPGFSGH
ECQTRMDSPCLTNPCYNGGTCQPINDAPFYRCSCPANFNGLLCHILDYSFNGGQGRDIAP
PPEVEIRCEVAQCEGRGGNAICDTQCNNHACGWDGGDCSLNFDDPWQNCSAALQCWRYFN
DGKCDEQCANAGCLYDGFDCQSLEGQCNPLYDQYCRDHYADGHCDQGCNNAECEWDGLDC
ADDVPQKLAVGSLVLVVHIAPDDLRNRSSSFLRELSGLLHTNVVFRRDANGEPLIFPYYG
NEHELSKHKRSDWTDPAQLMQRAKRSLTSFIKPRLRRELDPMEIKGSIVYLEIDNRQCYQ
QSDECFQSATDVAAFLGALASSGNLNVPYIIEAVTSEDEPSKTAEMYPMFLVLLALAVLA
LAAVGVVVSRKRKREHGQLWFPEGFKVSEPKKKRREPVGEDSVGLKPLKNSDSSLMDEQL
NEWAEDDTAKRFRFEEQSILDMTGQLDHRQWTQQHLDAADLRLNSMAPTPPQGEIENDCM
DVNARGPDGFTPLMIASCSGGGVENENGEGEDDPSTDVITDFIYHGANLHNQTDRTGETA
LHLAARYARSDAAKRLLESCADANVQDNMGRTPLHAAVAADAQGVFQILIRNRATDLDAR
MHDGTTPLILATRLAVEGMVEELINCHADPNAVDDSGKSALHWAAAVNNVDAAVVLLKNG
ANKDLQNNKEETPLFLAAREGSYETAKVLLDHLANRDIADHLDQLPRDIAQERMHHDIVR
LLEEYNLVRSPPLPLSPPLCSPNTYLGIKPSPGNNNTAKKARKPAGKGVGGGKDSGKDMR
MKKKKNGEGKNGGIMEVGVLSPVDSLESPHGYLSDVSSPPMMTSPFQQSPPITLNQLQGL
ADSHMGGAHQSLGKPFDSAPPRLSHLPVVNNGAQTGACDWLQRVQQQQQQAGFTQLIPSM
LPSTTMSHMGYPTMQTSHLGASSHMIPNHAHQNMAPMQHQNSASSGHIHSHHFLGDLSGL
DLQSGSGHAPIQTILPQESQRMAPPISSTQFLTPPSQHSYSNPMDNTPSHQPQVPDHPFL
TPSPGSPDQWSSSSPHSNLSDWSEGISSPPTNMQMNHIPDAFK
NT seq
7332 nt
NT seq
+upstream
nt +downstream
nt
atgaaccgtttcttggtgaaattaacgctactgacggcagcatcgctcgcggcggtggca
caagggcaaagatgctcagaatactgtcagaatggaggaatatgcgagctcaagccaagc
ggagaagcatcatgcaggtgtcctgcagatttcgtcgggcccaaatgtcagttcccgaac
ccgtgcagcccgtcgccgtgccgtaacggaggtgtttgccgtgcacggacgcaggggaat
gacgtggaggtgacctgcgactgcgtcttaggatacagcgatccactctgtctgacacct
gtcaatcatgcctgtatgagctccccgtgccgtaacggcggcacctgctctcttctcacg
ctcgacacctttacctgccgctgcccacctggatggtcaggtaaaacatgccaacaggcc
gacccgtgtgcgtcgaacccctgtgccaacgggggtcaatgttcagcgttcgactcgcac
tacatctgcacctgccctcctaacttccacggccagacgtgccggcaagacgtgaacgag
tgcgctctctcttcctccccctgtcgtaacggaggcacctgtataaacgaggtgggctcg
tacctctgccggtgcccaccggagtacgctggcacacactgcgagcgcctgtaccacccg
tgccacccctcgccctgcaggaacggaggcacatgcttacagaccagcgacacctcctac
acctgcacttgtctgtcagggttcatgggtcaaacgtgcgagcataacgttgacgactgc
acccagcatgcctgtgagaacggaggcaggtgtatagacggcgtcaatacgtacaactgc
cattgcgacaaacactggaccggtcagtactgcagggatgacgtagacgagtgtgaactc
tcgcctaacgcttgtcagaacggaggaacgtgtcacaacaccatcggcgggttccactgt
gtgtgtgtgaatggctggacgggcgacgactgcagcgagaacatcgacgactgcgccagc
gcagcgtgttcccaaggcgccacatgccacgatcgagtcgcatctttcttctgcgagtgt
ccacatggccgcacaggtcttctgtgtcacctggatgatgcctgcatcagtaacccatgt
cagaagggctcaaactgcgacaccaacccggtgagtggaaaagccatctgcacatgtccg
cccggatacacgggatcagcctgcaaccaagacattgatgagtgctcgctcggtgcaaac
ccatgcgagcatggcggacgatgtctcaacactaaaggctccttccagtgcaagtgtctc
caaggctatgaaggcccgcgctgtgaaatggacgttaatgagtgcaagtcaaacccctgc
cagaacgatgccacatgcctcgaccaaattggtggattccactgtatctgcatgccaggt
tacgagggagtgttttgtcaaataaacgccgacgattgtgcatcacagccttgcctcaat
aacggaaaatgcatcgacaagatcaactcgttccactgcgactgccccaaagggttctct
gggaatttatgtcaggtggatgtggatgagtgcgccagcacaccgtgtaaaaacggcgct
aagtgcacagacggaccaaacaaatacacctgcgaatgcactccaggtttttctggtgct
cactgcgagttggatatcaacgagtgtgtgtcgagcccttgtcattacggcgtgtgtagg
gatggcgtggcctctttcacctgtgattgtcgccctggatataccggccgcctgtgtgag
accaacataaacgagtgcttaagccaaccgtgccgaaacggaggcacctgtcaggataga
gagaactcgtacacctgtacctgccctaaaggaaccacaggtgtgaattgcgagataaac
attgacgactgcaagagtaaaccatgtgactatggaaagtgcatcgacaagatcaacggc
tacgagtgtgtgtgcgaacccggatacacaggctcaatgtgtaacatcaacattgacgac
tgtgcgataaacccgtgtcataacggtggcacctgcatcgacggggtcaacaccttcacc
tgcctctgtccggagggttttcgagacgccacctgcctctctcagcacaacgagtgctcc
agcaacccctgtattcacggcaactgcctggaccagatcaacagctacagatgcatgtgc
gaggctggctggacgggacgcaactgcgacatcaacatcaacgagtgtttgtccaacccg
tgtgtgaatggaggcacctgtaaggacatgaccagcggctacgtgtgcacctgcagagct
ggcttcagcggtcccaactgccagactaacattaacgagtgtgcatccaacccctgcctg
aaccagggctcctgtatcgacgatgtggccggattcaagtgcaactgcatgttgccttac
acaggcgaggtgtgtgagaacattttggctccctgtgcgcagcgtccttgtaagaacgga
ggcacgtgtcgcgaatctgaggattttcttagtttctcctgtgcttgtcctgctggatgg
caaggtcagacttgtgaggtggacattaacgagtgtgtgaggaatccttgcactaacgga
ggtgtgtgtgagaacctgcgcggtggataccagtgccgctgcaaccccggattcaccgga
gatctgtgcgagaacgacattgacgactgtgcaccaaatccgtgcagtaacggcggtgtg
tgtcaggaccgtgtgaacggctttatgtgtgtgtgtttggctggtttccgtggggagcgc
tgtgcagaggacatagacgagtgtgtgagcgccccctgtcgcaacggagggaactgcacc
gactgtgtcaacagctacacctgcagctgccctgtaggattcagcggcatcaactgtgag
atcaacacaccggactgcaccgagagctcatgttttaatggtggaacatgtgtggatggc
ataaactcgttctcatgcgtgtgtttgccgggattcaccgggaattactgccagcatgac
gttaacgagtgcgattcgcggccgtgccaaaatggaggcacctgtcaggacggatacggc
acctacaaatgcacctgtccacaaggatacaccggactcaactgccagagtctggtgcgc
tggtgtgactcgtctccctgtaagaacggtggctcatgttggcagcagggggcgtctttt
acctgccagtgtgccagtggctggacgggcatctactgcgacgtccccagtgtcagctgt
gaggttgctgccaagcagcaaggagtgtctgtggtcgttctgtgtcgtaatgcgggtcag
tgtgttgacgtcggtaacacacacctgtgcagatgtcaagccggatacacgggcagctac
tgtcaggaccaggtggatgagtgcaagccgaacccctgccagaacggagccacctgcacc
gactacctgggaggatacagctgtgagtgcgttcctggatatcacggggtcaactgcagc
aaggagataaacgagtgtctgtctcaaccctgccagaacggaggaacctgcatcgacctc
ataaacacgtacaaatgttcctgcccacggggaacgcaaggcgttcactgtgagattgac
atcgatgactgttccccagccgtggatccgttaaccggcgagtcgcggtgttttaacggt
ggccggtgcgtggatcgcacaggcggttacggctgcgtgtgtccggccggttttgttggc
gagcggtgcgaaggagacgtcaatgagtgcttgtctgacccctgtgaccccaacggatcc
tacaactgcgtacaactcaccaatgacttccgctgcgagtgccgtacaggatacaccggc
aagcgctgtgaaactgtgttcaacggatgcaaggacacgccatgcaaaaatggagggaca
tgtgctgtagccagcaacaccaaacacggatacatctgcaagtgccagccgggttactct
ggctcctcctgcgaatatgacgctcattcctgcggctccctgcgctgtcgtaatggtgcc
acctgcgtctccggccacctgagtcctcgctgtctctgtccgccgggcttcagtgggcac
gagtgccaaacacggatggactcgccgtgcctcaccaacccctgctacaacgggggcact
tgccaaccgatcaatgatgctccgttctaccgctgttcctgccccgccaactttaacgga
ctcctttgccacatccttgactactccttcaatggagggcagggccgggacatcgccccg
cccccggaggtggagattagatgtgaagtcgctcagtgtgaaggcaggggtggaaatgcc
atctgcgacacgcagtgtaataaccacgcgtgtggatgggacggtggcgactgctctctg
aatttcgacgacccgtggcagaactgtagcgctgccctgcagtgttggaggtacttcaac
gacggaaaatgcgatgagcagtgcgccaatgctggctgcctgtatgatggattcgactgc
caaagcctggaggggcaatgcaatccactgtacgatcaatactgtagggatcactatgcg
gatggtcactgcgatcagggatgtaataacgcggagtgcgaatgggacggcctcgactgt
gcagatgacgttcctcagaaactcgccgtgggaagtctggtactagtggtccacatcgca
cccgatgaccttcgcaaccgttcctcgtctttcctccgagagctgagcggactgctgcat
acgaacgtggtgttccgccgggacgctaacggagagccgctcattttcccgtactacggc
aacgagcacgagctgagcaaacacaaacgctctgattggaccgacccggcccagctgatg
cagcgagccaagaggagcctgacgtcatttattaagccccgcttacgacgagaactggat
ccaatggagatcaaagggtctattgtctatctcgaaattgacaaccgtcagtgttatcag
cagtctgacgagtgtttccagagcgcgacagatgtggcggcattcctcggagcgctggcc
tctagcgggaatctcaatgttccttacatcatcgaggccgtcacaagtgaggacgagcct
tcaaagacagccgagatgtaccccatgttcctggtgcttcttgctctggcggtcttagcc
ctggcggcggtgggcgtcgtggtctccaggaagaggaagagggaacatgggcagctttgg
ttcccagagggatttaaagtctctgaacccaaaaaaaaacgaagggaaccggtcggagaa
gattctgtcggactcaagcctctgaaaaactctgacagctctctgatggatgaacaactg
aacgagtgggcagaagacgacactgctaaacgattccggtttgaggagcagtcgattctg
gacatgactggtcagctggatcaccgtcagtggacgcagcagcacctggatgccgctgac
ctgcgtctgaactcgatggctccgacgccaccgcagggcgagatcgagaacgactgcatg
gacgtcaatgcccgcgggcctgatggtttcactccactgatgattgcgtcgtgcagtggc
ggcggtgttgagaatgaaaacggcgagggagaagacgatccgtccactgatgtcatcaca
gacttcatctaccacggtgccaacctgcacaatcagacggaccggaccggcgagaccgcg
ctgcacctggcggcccgctacgcccgctcggacgcggccaaacgcctgctggagtcctgc
gccgatgctaatgtccaggataacatgggccgcacgcctctccatgctgctgtcgctgct
gacgcgcagggtgtcttccagattctcattcggaaccgagcgacggatctggacgcccgc
atgcatgacggaacgactccgctgatcctggccacccgattggctgttgaaggaatggtg
gaggagctcattaactgccatgctgatccaaatgctgttgatgattctggtaagtcggct
cttcactgggcggctgcggttaataacgtggacgctgctgtcgttcttttaaagaatgga
gcgaataaagaccttcagaataacaaggaggagacgccacttttcctggccgctcgtgag
ggcagttacgagaccgctaaagtcctgcttgatcacttggccaaccgtgatattgcagat
cacctagaccagcttccacgagacatcgcacaggagcgcatgcaccacgacatcgtccgt
ctattagaagaatacaacctggtccggagtcccccgctgcccttatcgccccctctctgc
tcgcccaacacctacctgggcatcaaacccagcccgggcaacaacaacacggccaagaag
gcgaggaaaccggcgggtaaaggcgtgggaggagggaaggacagcggaaaagacatgaga
atgaaaaagaaaaagaacggagagggcaaaaacggagggattatggaagtgggcgtcctc
tcgcctgtcgattcgctggagtcgccccatggttacctgtcggatgtctcctccccacct
atgatgacgtcaccctttcaacagtccccacccatcactttgaatcaactccaaggattg
gctgattctcacatgggcggagcccatcagagtttagggaaaccgtttgactccgcccct
ccacgcttatcccatctgccggtggttaacaatggagctcaaacaggggcgtgcgattgg
ctgcaaagggtgcaacagcaacaacagcaggcaggcttcacacagctgataccctcaatg
ctcccttccaccactatgtcacatatgggctatccaacaatgcaaactagccacctcggc
gcatcgtcacacatgattcccaaccacgcccaccagaatatggcgcccatgcagcatcaa
aacagcgcctcctctggccacatccactctcatcacttcctaggtgacctgagtgggctg
gatcttcagtctggctcaggacacgcgcccatccagaccatcctaccacaggagagccag
cgcatggctcctcccatttctagcacccagtttctgactccgccttctcaacatagttat
tccaaccccatggacaacacgcccagtcaccagccgcaggttcctgaccacccgttcctc
acgccctctcctggctctcccgaccaatggtcaagctcgtctccacattccaacttgtct
gattggtcagagggcatctcaagcccacccaccaatatgcaaatgaaccatataccagat
gccttcaagtag
DBGET
integrated database retrieval system
