Pimephales promelas (fathead minnow): 120484233
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Entry
120484233 CDS
T08155
Name
(RefSeq) polyribonucleotide nucleotidyltransferase 1, mitochondrial isoform X1
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120484233
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pprm03019
]
120484233
03016 Transfer RNA biogenesis [BR:
pprm03016
]
120484233
Enzymes [BR:
pprm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
120484233
Messenger RNA biogenesis [BR:
pprm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
120484233
Transfer RNA biogenesis [BR:
pprm03016
]
Prokaryotic type
tRNA degradation factors
120484233
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
Motif
Other DBs
NCBI-GeneID:
120484233
NCBI-ProteinID:
XP_039535220
LinkDB
All DBs
Position
Unknown
AA seq
808 aa
AA seq
DB search
MRVMMMSVMKARLGWVRLAAVRGFHERTVAVGLGDRRLEISTGKLARFADGCAVVKLGET
SVMVTAVSKSKPASASFMPLVVDYRQKAAAAGRIPTNHLRRELGSTDSEILTSRLIDRSI
RPLFPAGYFYDTQVLCNILAADGVNDPDVLAINGASAALALSDIPWSGPIGECSARAGVC
VCVCVCDAVCAAGAVRVGLVDGEFLVNPSRSEMNRSSLNLVIAGAPASQVVMIEAAAENV
LQQDFSHAVKLGVKHTQLIVQAIQQMSRELKVSKRSPARLFTASAEMVDYTRLLTSAKIY
AVFTDFTHDKISRDEAINKIRLEAEEQIREKFPQAETFEVVEAFNSVSREIFRNLVLQEY
RRCDGRDLTSLRNISCEVDVFKPLHGSALFQRGQTQVLCSVTFDSLESSLKTDVITTALS
GVKDKNFMLHYEFPPYATNEIGRMGGTNRRELGHGALAEKALRPIIPADFPFTIRVTSEV
LESNGSSSMASVCGGSLALMDAGVPVSSAVAGVAIGLISRASPEKPSEIQDYRLLTDILG
IEDYNGDMDFKMAGSSKGITALQADVKIPGLPLKIVMEAIQQATGTPPPRASWDAHSECL
TCRSLLSLPVAKREILAIMNKSIAKPRSSRKENGPVVENVSVPLSRRARFVGPGGFNLRR
LQAQTGVTISQVDEDSFCVFAPTPSAMNEAQEFIREICKDDQEQQLEFGAVYTATITEIR
DIGVMVKLYPNMSAVLLHNSQLDHKRIKHPSALGLEVGQQIQVKYFGRDPTDGRMRLSRK
VLQSPVSATVKSLSERHSISIGEPVTDP
NT seq
2427 nt
NT seq
+upstream
nt +downstream
nt
atgagagtgatgatgatgagtgtgatgaaggctcggctcggctgggtccggctcgctgct
gtcagaggctttcatgagcggactgtggctgtgggtttaggggacaggaggctggagatc
tcaaccgggaaactcgctcgcttcgctgacggctgtgcagtggtcaaattgggcgagacg
tcagtgatggtgactgcagtcagcaagagcaaaccggccagcgcttccttcatgcctctc
gtggtggattacaggcagaaagcagcggctgcaggacgaatacccacaaaccacctgagg
agagaactgggcagcaccgactccgagatcctgaccagccggctcatcgatcgctccatc
aggccgctgtttcccgccggatacttctacgacacacaggtgctgtgtaacatactcgcc
gctgatggagtcaacgacccggatgttctggccattaacggagcgtctgcagctctggct
ctgtctgatatcccctggagcggccccatcggtgagtgcagcgctcgtgcaggtgtgtgt
gtgtgtgtgtgtgtgtgtgacgctgtgtgtgctgcaggtgcggtgcgcgtggggctggtg
gacggagagttcctggtgaacccctcgcgctcggagatgaacaggagctcgctgaacctc
gtgatcgcgggagcgccggccagccaagtggtgatgatcgaggccgcggcggagaacgtc
ctccagcaggacttcagtcacgcggtgaagctgggggtcaaacacacacagctgattgtc
caggccatccagcagatgagccgtgagctgaaggtgtccaagcgctctcccgccagactc
ttcaccgcctccgccgagatggtggactacacacgcctgttgacgtccgctaagatctac
gctgtgtttacagacttcacacatgacaagatatccagagatgaagcgattaataagatc
cgtctggaggccgaggagcagatcagagagaagtttccgcaggcggagacgttcgaggtg
gtggaggcctttaacagcgtctctcgagagatcttcaggaatctggttcttcaggaatac
agacggtgtgacggaagagatctcacgtctctacgcaacatctcctgtgaggtggacgtg
tttaagccactccacggctcggctctcttccagaggggtcagacacaggtgctgtgctcc
gtgacctttgactctctggagtccagtctgaagacagacgtgatcaccacagcgctcagt
ggagtcaaagacaagaacttcatgctgcactatgagtttcctccgtacgccaccaatgag
atcgggaggatgggcgggaccaaccggcgcgagctcggccacggagcgctggcagagaaa
gctttgagacccatcattcctgcagactttcccttcaccatccgcgtgacgtctgaggtg
ctggagtccaacggatcctcctcgatggcgtcggtgtgtggcgggagtctcgcgctcatg
gacgcaggtgtgcccgtgtcgtccgctgtggccggcgtggccatcggcctgatctccaga
gccagcccggagaagccgtcggagatccaggactacaggctcctgacggatattctggga
atagaagattacaacggagacatggacttcaagatggcggggagcagcaagggcatcacg
gctctgcaggcggatgttaaaatcccaggacttcctctgaagatcgtgatggaggccata
cagcaggccacaggtacgcctcctccacgagcatcatgggacgcacacagcgagtgtctg
acgtgccgctctctgctttctcttccagtggccaaaagagagattctcgccatcatgaac
aagagcatcgccaaaccccgcagctcccggaaggagaacgggccggtcgtggagaacgtc
agcgtgcctttatccagacgagctcgcttcgtcggtccaggagggtttaatctgcgcaga
ctgcaggctcagacaggtgtgacgatcagtcaggtggacgaggactcgttctgtgtgttc
gctcccactcccagcgccatgaacgaagcccaggagttcatccgggagatctgtaaagat
gatcaggagcagcagctggagttcggagccgtttacaccgctaccatcacagagatcagg
gacatcggtgtgatggtgaagctgtaccccaacatgagcgccgtcctcctgcacaactct
cagctggaccacaaacggatcaagcatcccagcgctctcggactggaggtcggccagcag
atccaggtgaagtatttcggccgggacccgacggacggccggatgaggctctctcggaag
gtcctgcagtctccggtgtcggcgacggtgaagagtctgagcgagagacacagcatctct
attggcgagcccgtcacggacccctag
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