Pimephales promelas (fathead minnow): 120484261
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Entry
120484261 CDS
T08155
Symbol
arid1aa
Name
(RefSeq) AT-rich interactive domain-containing protein 1A isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
120484261 (arid1aa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pprm03000
]
120484261 (arid1aa)
03021 Transcription machinery [BR:
pprm03021
]
120484261 (arid1aa)
03036 Chromosome and associated proteins [BR:
pprm03036
]
120484261 (arid1aa)
Transcription factors [BR:
pprm03000
]
Eukaryotic type
Helix-turn-helix
ARID
120484261 (arid1aa)
Transcription machinery [BR:
pprm03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
120484261 (arid1aa)
Chromosome and associated proteins [BR:
pprm03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
120484261 (arid1aa)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
120484261
NCBI-ProteinID:
XP_039535269
LinkDB
All DBs
Position
Unknown
AA seq
2302 aa
AA seq
DB search
MAAQVASATSLNTSPPSELKKPDRDPKEESVPGEKQQENKEPGLDSGSPARGELQDRADV
GNAGGGGESEMKNGNGNPSRVNNNQNETTGPEGNNHPGMVHHHAPGFQPASYNVNYAQHY
GRAPFHQHGGQQSPGMAAAAGPGALSSSMMDSYQPNSHDHSFPNHQYNNYSPFGSRSPYP
GQSYGINSPRSAPQAQAVGGQSAKQQQQPAAAASYSNQRYNMGNPQPTSTPTLNQLLTSP
SSGRGYPNYPPSDFNSQDSVKGPADIGSSGGQYGGGHPGWQQRTHHPPPMSPGSTGQPLG
RNQTPGSMDQMGKMRGQPYGSGGPYSQQPHQGPPSGPQQGPAYPGQGYGPPGPQRYPMGM
QGRMQYGQQMPSYGQQGPGGYVQQGQQPYYGQHGQGPHSGQQQSPYPQPSPGQPGSQAPY
SQQPHAPQSSGPHVQTGPSYQQPHMSQQPQGQMPGPSPGPTQSQSPYSQSSAASQSSQSP
YPQQQVPQSQPSQQGSSQAPPASQPQPSYPPGQGPQQQQPQPPPPSQQPPQTPTPASQQP
AGHGQMPPGQPTSYSQNPPQQQQQQQQQQPSPYQRFPPPPQEISQESFSSQSSAPTSGPP
LASKNSTEDMQGRPSSLPDLSGSIDDLPTGTEGALSPGVSTSGVSSSQGEQSNPAQSPFS
PHTSPPVGSPASTSASRSGPLSPATMPGNQMPPRPSSGQSDGIMHSSMNQPGMGQERGYM
QRNPQMAPYGSPQSSSALSPRQSSGGQVHAGMVPYQQNNSVANYGPQGGQYGPQGYPRQP
GYSGMPNANYPGPGMGGSMNPMSGQGGGPLFAGMASGRMPHGQMGARPFGPNMGPNMGPN
MGPNMGPNMGPGMGPNMGNIPPQVGTGMCPPPGLNRKPQEVAALQHGPSNSIHNRLPGYT
NMSPGPGMMGSGPPYGSMNNMPGMMNTQGSPYPMGGNMSNNTSGMSPGPDFAMDGKLNQA
QKMNNKVEGTPKTESKSKKSSSSTTTNEKITRLYEIGPEPERKMWVDRYLAFIEEKAMGM
SNLPAVGRKPLDLFRLYMSVKEIGGLTQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQ
CLYAFECKIERGEDPPPEIISGDSKKNQAKIQPPSPAGSGSLQGPQTPQSTSSSMAEGGD
LKPPTPASTPHSQMPPMPSGRSSVNLQDPFADSDFSRRSTMTPNSGYQSGMSTPEMPGRM
GPYEPNKDHFSGMRKVGEQFMSGGQGPNSSLGDQCNRGPQGPMGNMPMGQRHQYPYGPGY
DRRPESGMGTDGSMGPGVPQPNMMPSNAESGMYSPNRYPPQQQRHDSYSNQYPGQGAPPG
GAYPNQQPGMYPQQQLNYKRPGDGSYPPAKRHHDGEMFSGPYNTQQSQPPPQAPPSGPSS
GQQEMFNQYNSSYPGSERRPPGPQNQFSFVRDRMQAGTGPNSQGSMPPQMMGSPMQSGPD
GPQAGMWPGRGDMGYPSYPNRQGPPAGPGQGPGYHTMNRSEDMMSSEPRMNHDGQWPGPR
QPPYGPGSAGPPMSRPLQSNYQSPQTMQNHIPQVSSPTPMPRPMESRTSPSKSPYMPSNI
KMQKVGPPVPASHIVPPSVQPPMMRRDLSFPPGSIEATPPVLKSRRRLTMKEIGTPEAWR
VMMSLKSGLLAESTWALDTINILLYDDNSISNFNLMQLPGFLELIVEYFRRCLIEIFGIL
REYEVGNPGQRALLDPSVLKKDEDTVDDEVLVEGMEEDGETEEEDEGEEMHRLKHQEQHS
APLQIKQEEMPRMLDDSVKKEDCHGIEGESPAEPKTSEPPCLELAVAQEKPKQASKFDKL
PLKIVRKKDPFVVDYSNKLGRLQEFDSGLLHWSIGGGDTTEHIQTHFESKMDLLHQRKHL
PAQVPDKKRGAQKDSQAPSLPSSSEEHQKEVDRQSLQSHPAASPESSTEKVPNGISDLRE
DRPADCLETSSEGKSHLEKDPDKKLSEATTPENIRPAPPSPSLQGQSCIAILEDEPHSKD
EAPLVTLSDWQDSLARRCLCVSNIVRSLSFIPGNDSEMSKHPGLLLLLGRLLLLHHLHPE
RKQAPLTYEKEEEVDESLSSKKDEWWWDCLELLRENCLVTLANISGQLDFSVYTESICLP
LLDGLLHWAVCPSAEAQDPFPSLGLNGALSPQRLVLETLCKLSIQDNNVDLILATSPFSR
LEKLFGNLVRLVGERKVPVCREMAVVLLANLAQGDSLAARAIAVQKASVGNLLGFLEDSL
AATQFQQSQGSLLHMQGSHFEPTSVDMMRRAARALLALAKVEENHSEFTLYESRLLDLSV
SPLMNSLVSHVICDVLFLIGQS
NT seq
6909 nt
NT seq
+upstream
nt +downstream
nt
atggccgctcaggtcgccagcgctacctctctcaacaccagcccgccttccgagctgaaa
aaaccggatcgagacccaaaggaggagtcggtaccgggggagaagcagcaggaaaataag
gaaccgggactagacagtggatctccggctcgcggggaactgcaggaccgggccgatgtg
ggaaatgctgggggaggaggggagtcggagatgaagaacggcaacgggaatccgtcgagg
gtgaataataatcaaaatgagaccaccggaccggaggggaacaaccaccctgggatggta
caccatcacgcgcccgggtttcagccagcttcctataacgttaactacgcgcagcactac
ggccgggccccttttcatcaacatggcggacaacaaagccctggcatggcagctgcagcg
gggccaggcgcgctgtcgagcagcatgatggactcatatcaacccaactcccatgatcac
agcttcccgaaccaccagtacaacaactacagtccgttcgggagccggagcccgtacccg
ggccagagctacggcattaactctccgcgcagcgctcctcaagctcaggcggtagggggg
cagtcagccaagcaacagcagcagccagcagcggctgcttcttacagcaatcagcggtat
aacatgggaaacccgcagccaacatccactccgactcttaaccagcttctcacctccccg
agcagtggccggggctacccgaattaccccccgagcgacttcaacagccaggacagtgtt
aagggaccagcagatataggcagcagcggcgggcagtacggtgggggccatccgggttgg
caacaaaggacccatcacccgccacccatgagtcctggaagtaccgggcagcccctgggt
agaaatcagactccaggctccatggatcaaatggggaaaatgcgcggtcagccatatggg
tcaggtgggccttactcccagcagccccatcaagggcctccttcagggccccagcagggc
cctgcttacccaggccagggctatgggccccctggccctcagagataccctatgggcatg
caaggacgtatgcagtacggccaacagatgccatcatacggacagcagggaccagggggt
tacgtgcagcaggggcagcagccttattatggccagcatggtcaggggcctcactctggg
cagcagcagtcgccatacccccagccttcccctgggcaaccaggaagtcaggcaccttat
tcacagcaacctcatgcaccccagtcatctggcccgcatgtacagactggcccttcttac
caacaaccccacatgtcccagcagcctcaaggtcaaatgcccggcccctctccgggccca
acccagtcccagtccccgtactctcagtcctcagcagcatcccagtctagccagtctcca
tatccacagcaacaggtgcctcagtcccagccctcacagcaggggagctcccaggcccct
cctgcatcccagccccagcccagttacccgcccggccaaggtccccaacagcagcagccg
caaccaccgccaccatcacagcagccaccgcagacgcccacacctgcttctcagcagccc
gcgggacacggacagatgccgccgggacagcctacgtcatattcccagaatcccccacaa
caacaacaacagcagcagcagcaacaaccatcaccgtatcagcgatttcctcctcctcct
caggagatttcccaggagtcttttagctcccagtccagcgctccaacctccggcccgcct
ctggcatcgaagaacagcacagaggacatgcagggcagaccctccagtctaccagaccta
tccggttctatcgatgacctacccactggtacggagggtgctctgagtcctggagtcagc
acatctggagtatctagcagtcaaggagaacagagcaatccagcacagtcacccttctcc
ccccacacttctccgccggtgggctcgcctgccagcacctcagcatctcgctctgggcct
ctgtctcctgccacgatgccagggaaccagatgcctccccgcccttcaagtggacagtct
gatgggatcatgcactcttcaatgaatcaacctggcatgggccaagagagaggatatatg
cagagaaaccctcagatggcaccctatgggtctccacagtctagctctgctttgtctcct
cgtcagtcatctgggggccaggtgcatgctggaatggttccttatcagcagaacaactcc
gtggcaaactatgggcctcagggtggtcagtatggaccacaaggttaccccaggcagcct
ggttacagtggcatgcctaatgccaattacccaggccctggcatgggcggatccatgaat
cccatgtctgggcaaggaggagggccactgtttgctggtatggcttctgggaggatgcct
catggccagatgggtgcacgcccctttggtcccaacatgggtcccaacatgggtcccaac
atgggtcctaacatgggtcccaacatgggtcccggtatgggccctaatatgggcaacata
ccccctcaagtgggaactgggatgtgccctcctccaggcctcaacagaaagccccaagag
gttgcagcattacagcacggaccttccaactcgatacacaacagactaccaggttacacc
aatatgtctcctggtcctggtatgatgggctcaggacctccgtatggctcaatgaacaac
atgcctgggatgatgaacactcagggttctccctaccccatgggtggtaacatgtctaac
aacactagtggcatgtcccctggtccggactttgctatggatgggaaacttaaccaagcc
cagaaaatgaataacaaagttgagggtacacccaagacagaatcaaaatccaagaagtca
agttcctccacaacaaccaatgagaagatcactcggttgtatgagataggcccagagcca
gaaagaaagatgtgggtagaccgttacttggctttcatagaggaaaaagccatgggcatg
agtaacctgccagctgtgggacgtaagccccttgatctcttccgcctctacatgtccgtc
aaggagattggaggtcttacacaggttaataagaacaaaaaatggagggagctggccaca
aatctgaatgtggggacctccagcagtgctgccagctctctgaaaaagcagtacatccaa
tgtctgtatgcttttgaatgtaagattgagcgtggagaggacccaccacctgaaattata
tctggagatagcaaaaagaaccaggccaaaattcagcctccctccccagctggatctggc
tctctccagggtccccagactccacagtccaccagcagctccatggcggaaggcggagac
ttgaagccccctactcctgcctccaccccacacagccagatgcccccaatgccaagtggc
aggagtagtgtgaacttgcaagatccatttgctgatagcgacttctcacggagaagtact
atgaccccaaactctggctaccagtcaggcatgagcaccccggaaatgcctggtcgcatg
ggaccctatgaacccaataaagaccactttagtggtatgcgtaaagttggagaacagttc
atgtctggtggacagggtcccaacagcagtctcggggatcagtgcaacaggggaccacaa
ggccctatgggaaacatgcctatgggccagcggcaccagtatccatatggccccggctat
gacagaagaccagagtcagggatgggcacagatggcagcatgggtcctggagtgccacag
ccaaatatgatgccttccaatgctgaatctgggatgtactcaccaaatcgttaccctcca
cagcagcagcgacatgattcctatagtaatcagtatcctgggcaaggtgcgcctcctggt
ggtgcttatccgaatcagcagcctggaatgtacccgcaacaacaattgaactacaaaagg
cctggtgatgggagctacccaccagctaaacggcatcatgacggtgagatgtttagtggg
ccatacaatactcagcagtcacagccaccaccacaggctccccctagtggtccctcaagt
ggtcagcaggaaatgtttaaccagtataacagttcttaccccggttcagagcgccgtccg
cccggtcctcagaatcagttctcttttgtaagagatcggatgcaagcagggacaggccca
aactcccagggttccatgccacctcaaatgatgggcagtccaatgcagtctggtcctgac
ggtcctcaagctggcatgtggccgggccgaggtgatatgggctaccccagttaccctaac
cgtcaaggaccacctgctggtcctggccagggacctggctaccatacaatgaaccgatct
gaagacatgatgtcgtctgagccacgcatgaatcatgatgggcagtggcctgggccacga
cagcccccttatggtcctggtagcgcaggtccaccaatgagcagacccttgcagtccaac
taccagtctcctcaaaccatgcaaaatcacattccacaggtgtcaagccccacacccatg
cctcgccccatggaaagtaggacttcccccagcaaatcaccctacatgcccagcaatatc
aaaatgcagaaggtgggacctccagtccctgcatctcacattgtacctccctcagtacag
cctccaatgatgagaagagacctatccttccctccaggatcaattgaggctactccacca
gttctcaaatcgcgcaggcgtcttaccatgaaagaaattggcactccagaagcatggaga
gtcatgatgtcccttaaatcaggactgttggcagagagcacatgggctttagacaccatc
aacatcttgttatatgatgacaacagtatttcgaatttcaaccttatgcagctccctggt
ttcctggaattaattgttgagtatttccgccgttgtctcattgagatctttgggattctg
agggaatatgaagttggtaatccaggacaaagagctctgttggatcccagcgtgctcaaa
aaagatgaagacacagttgatgacgaggtattggtggagggcatggaggaagatggagaa
acggaggaggaagatgaaggagaggagatgcacaggttaaaacatcaagaacaacattca
gcaccgctccagataaaacaagaagaaatgccaagaatgcttgatgactctgtaaagaaa
gaagattgccatgggattgaaggggagtcacctgcagaacccaagacttcggagccacct
tgtcttgagttggctgtggctcaagagaagcctaaacaggctagcaagtttgataagctt
cccttgaagattgtgcgaaagaaggatccgtttgtggtggactactctaataagcttggc
cgattgcaggaatttgacagtggccttctgcactggagtatcggtggaggtgatacaaca
gaacacatccagacccactttgaaagcaagatggacctgttgcaccaacggaagcatcta
cctgcccaggtcccagacaagaagagaggagctcagaaggacagccaggcaccttcactg
ccctcatccagtgaagagcaccaaaaagaagtggaccggcagtctctccagagtcatccg
gcagcctctccagagtcatcaactgagaaagtgcccaacggaatttcagatttgagagag
gacagacctgctgactgcttagaaacttcctctgaggggaaatcacacctagagaaagat
ccagacaagaaattgtcagaggcgacaactccagaaaacattaggccagcacctccaagc
ccatcattacagggtcagagctgcattgccattttagaagatgagccacacagcaaggat
gaagctcctcttgtcacgctctcagactggcaagattcccttgcccgtcgctgcctttgt
gtctccaacatcgtccgcagcctctctttcatcccgggcaatgactcggagatgtccaag
cacccagggctgttgctattgctgggccgcctgttgcttctccatcatctgcatccagag
cgaaagcaggcacctttaacctacgaaaaagaagaagaggtggatgagagtcttagtagc
aaaaaagatgaatggtggtgggactgtctggagctactgcgggaaaattgcttagtcact
cttgccaacatctcaggccagcttgacttctcagtctacactgagagcatctgcctgcct
ctgctggatggcttgctacattgggccgtttgtccttcagccgaagcccaagaccccttc
cctagtcttgggcttaatggcgccttgtccccccagagactagtcctggaaaccctctgt
aagctcagcattcaggacaacaatgtggacctaattctggcaacgtcaccttttagtaga
ttagagaagctctttgggaaccttgtgcgtcttgttggagagcgaaaggtgcctgtttgt
cgggagatggcagtcgtgctgctggccaatcttgcacagggtgacagcctggcagcccgt
gccattgcggtacagaaggccagtgtagggaatctgttgggtttcttggaggacagctta
gcggctacacagttccagcagagccaaggttccttactgcacatgcaggggtcacacttt
gagccaacaagtgtggacatgatgcgacgggctgctcgggctctgcttgccctcgctaag
gtggaggagaaccactctgagtttacgctctatgaatcgcggctactggacctttctgtc
tccccactcatgaactcattggtgtcccatgtcatctgtgatgtactctttttgataggc
cagtcatga
DBGET
integrated database retrieval system
