KEGG   Pimephales promelas (fathead minnow): 120484312
Entry
120484312         CDS       T08155                                 
Symbol
mdc1
Name
(RefSeq) LOW QUALITY PROTEIN: mediator of DNA damage checkpoint protein 1
  KO
K20780  mediator of DNA damage checkpoint protein 1
Organism
pprm  Pimephales promelas (fathead minnow)
Brite
KEGG Orthology (KO) [BR:pprm00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pprm03400]
    120484312 (mdc1)
DNA repair and recombination proteins [BR:pprm03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    120484312 (mdc1)
SSDB
Motif
Pfam: BRCT_2 BRCT RTT107_BRCT_5 PTCB-BRCT FHA BRCT_3
Other DBs
NCBI-GeneID: 120484312
NCBI-ProteinID: XP_039535345
LinkDB
Position
Unknown
AA seq 1934 aa
MDATQQIEDPFSEEEAEEEEKEGRSEREQLATLKVFKNDHIPEAEFPLYVGENVLGRDPS
ACSVLLPARSVSGRHAVISISVFRSSSSRSGNGDAVEALLWDMGSMNGTRKGRFKLTPQV
RYALTEGENVVIADVPCQYIGLNISKSDTHKTPEKGLSKQEEKDSSPLSSSDSESKLRKG
VQNGLKEKEKSALPPVPSWSPEDEEPKMCSPQPAFKNPEITLVPESDSDGESDERKDFVS
DSASSSYRCSSTNSSFLTPAKKVIPESEDESAITPSSASMDRFRLRETSGKLCSKSSKPS
LLALNLDSDTDFEADMEKSKTEPEVQPELAKNVEPVPSAEFHMDSDTDVEEEEPEAYKAE
PEAQEAITLEKSVSSVGLHMDSDTDVDEEEKEKSTTEPKAQIEQVPKMGPVPSAEFHMDS
DTDVEEEEANKAKPEAQNEVNLNKSVSSVGLHMDSDIEVEEEEEKIKTEQKALIEEAPKV
KSVPSADLHMDSDTDVDENEAPITEDVSKKKAKVLAVTESTSSAPPPTEFNLDSDTDVED
ENPMVTEVSHPIGEGSDVRPTSTPGTELHMDSDTDVDEEIEDKEKIKARDLLSNSETDDE
DPFKPVPGKAVKVAESQKAYVGGKAILSEESTHKKQDHHSQAKTYLEEPTQAFGHLEDWD
LPPTQVYGAARASAGFKPKQLDLEATQAYGTETDREEDQEEPLSHTQVYSNLSTAETQFI
PVANMEEENEETPNYSHLSTADTVIIASTPRQEEQTQPFFFFTTQTQPIWEGEDKEFYQS
EPTQLMEADTINETQEGEEEENMKQGGRIHGGEKVHKGKHSSSYLVIAETQPMCEEEEAT
DVDLSGDSFQKPSTRKQPEKCDSAHLDENNSCSHVTIAETQPMGDDNEVPDQDNVICSTH
SEKPTRSHITIAETQPMFEEDQAPEDDLKNHLKVSRRQTNKGEPIQQTEKASTSSLEIPE
TQHVGEDDEEQEKLLNSKMPSRRSRRGRPKKEKEASQPAENVVHHTMTETQLMCEEGQAS
DEDLKSGINNAVPSTGQQTDEFRSPELAQTGLKSCVTIAETQPMCEEEPCEDLTKEVSTG
QIDEHNSTELLKTSSSHFIVAETQPMHEEDEGQEKHLSSKTSSRRSRRGKAKKDSEVPQT
SEVAVHHTITETQPVPEEVIERDEDLSSGIKSRRSRRGRQINEDSVPQPPEAAVSSLSTI
TETLPVCDDGTGRDENLSIIRSKRSHRGKKVDEGEPAQSVEPNSDFMVVETQPMCEESAQ
EEPSGRSSRRPRKDKTEVESETPSSGKVQSKTRKGKEGKIKRGKALSEEEGESEEEKTVR
RGTRRTGIKHKCSEKEEEERLEERNAQAEKQRMEKELQEQEERDRVERKEKERLERERKE
QEEREKAETEMRQKLEREQRELEEKQRLKREEEKIRKENERIQREKEEKDRLEKEEKEKL
ERESREREEQRQKEEERIQMEKEQKEKERLAAEREQLEKEKEENEDLEMRAREQKETEDG
NHQEAEKNDGLEKDKTELETPLVPPARRSRRCSSSSINSEQSVSSQQEPSIQRARRGRGR
GRGRGRGRQTTNEQPISARQSSQRGVAIEVEDKELDLNSTTRSRSRSSSRSSERSANSFI
TSNEGTRGRGRGRKSVKLQEPQEVSQAKTSGKGRGRRGRHSGVENVNVEMSHELEQDAEM
VNETAVPQSNSRGRKRAATTSTSTEEAPSPTPKTPRRSVSSQAYKVLFTGLTDDDGEKVV
SQLGGSLARGVNDMTQLVTDKARRTVKFLCAVARGVPIVNPDWLKKCGKVGHFLSTDEYI
LKDVEQEKKFSFSLKKTLQTAQSQPLLKGYEIHVTPSVMPEPSQMKEIITCCGARFLPKM
PSAQKKNTVVVSCEQDRALCQKAVSMSLPVVSTEFLLTGILQQRVDLQAYSLTSSLNTSN
QPAAPKAAARGRRK
NT seq 5805 nt   +upstreamnt  +downstreamnt
atggatgccactcagcagattgaggatcctttctctgaagaagaagcagaagaagaagag
aaagaaggaagatcagaaagagaacagttagctacactgaaggtgtttaaaaatgaccac
ataccagaggcagaattccctctctatgtcggagagaatgtcttgggccgtgatccttct
gcctgttctgttctgcttccggctcgatctgtatccggtcggcatgctgtcatctccatc
tcggttttccgctctagcagcagccgctccggtaacggtgatgctgtggaagccctttta
tgggacatgggcagtatgaatggtaccagaaaaggtagattcaagctgacacctcaggta
cgatatgctttgactgagggagagaatgtggtgatcgctgacgtgccatgtcagtacatt
ggcctgaacatctcaaaaagcgatacacacaaaaccccagagaaaggactttctaaacag
gaggaaaaggatagttcgccgctatcaagcagtgactcggagtcaaagctgaggaaaggt
gtgcagaatgggttgaaagagaaagagaagagtgccttgcctcctgtgccttcatggagc
ccagaggatgaagaacccaaaatgtgttcaccacagccagctttcaaaaatcctgagatc
accctggtacctgaatcagactcagatggagagagtgatgagaggaaagattttgtttca
gactcggcgtcctcctcttatcggtgtagttccacaaattcatcattcctgacccctgca
aaaaaagtcattccagagagtgaggatgagagcgccatcactccatcttcggcctcaatg
gacagattcagactgagggaaacctccggtaaactctgttctaaatcatctaagcctagc
ctgctagctctcaacttggacagtgacactgattttgaagcggacatggagaaaagcaag
actgaaccagaggtccagcctgaattagctaaaaacgtagaaccagtaccttcagctgaa
tttcatatggacagtgatactgatgttgaggaagaggagccggaggcttataaggctgaa
ccagaggctcaggaagcaataactctagagaaatctgtatcttcagttggtctacatatg
gacagtgatactgatgttgatgaagaagagaaagagaaaagcacaactgaaccaaaggct
cagattgaacaagttccaaagatgggaccagtaccttcagctgaatttcatatggacagt
gatactgatgttgaggaagaggaggcaaataaggctaaaccagaggctcaaaatgaagta
aatcttaataaatccgtatcctcagttggacttcatatggacagtgatatagaggtagaa
gaagaggaagagaaaatcaagactgaacaaaaggctctgattgaagaagctccaaaggta
aaatcagtaccttcagcagatcttcatatggacagtgatactgatgttgacgagaatgag
gctcctataactgaagatgtctccaaaaagaaagcaaaagttttagcagttacagaaagt
acttcatcagcaccaccacctacagaatttaacttggacagtgatactgatgttgaagat
gaaaatcccatggtgacagaggtttcacatcccattggagagggaagtgatgtcagacct
acatcaacaccagggacagagcttcacatggacagtgacacagatgtagatgaagagatt
gaggacaaggagaagataaaggctagagatcttctatcaaacagtgaaacagatgatgag
gatccttttaaacctgtaccaggcaaagctgtgaaggttgcagagagtcagaaggcttat
gtgggtggcaaagcaatactgtcagaagagagtacccataaaaaacaagaccatcattct
caagcaaagacttatcttgaggaaccaacccaagcttttggtcacttggaagactgggac
ctaccgcccacacaagtatatggagctgctagggccagtgctgggttcaagccaaagcaa
cttgatcttgaggctacgcaggcatatggcacagagacagacagagaggaagatcaggag
gagccactgagccatacccaagtctactccaacctctccactgctgaaacgcagttcatt
cctgtagcaaatatggaggaggagaacgaagagacacctaattactctcacctttccaca
gcagacactgtaatcattgccagcaccccaagacaggaagagcagacacagccctttttt
ttcttcacaactcaaacgcaacccatctgggagggagaagacaaagagttttatcagagt
gagcccacccagctcatggaggcagacaccatcaatgaaacgcaagagggtgaagaggag
gagaacatgaaacaaggtgggagaatccatggtggagaaaaagtacacaaaggtaaacac
tccagctcttatcttgtcattgctgaaactcagcccatgtgtgaggaagaagaagcaaca
gatgttgatctgagtggggacagctttcagaaaccaagcacaagaaaacagcctgagaaa
tgtgattctgcacatcttgatgaaaacaactcctgctcccatgtcaccatagctgaaaca
caaccaatgggtgatgataatgaagtaccagatcaggacaatgtgatctgcagtactcat
tcagaaaaacctaccaggtcccatatcaccatcgctgaaactcaaccaatgtttgaggaa
gaccaagcaccagaggatgatctgaagaatcatctgaaggtcagtagaagacaaactaac
aaaggcgaacccatccaacagactgaaaaagcctctacttccagtcttgaaatccctgaa
acacaacatgttggtgaagatgatgaagagcaggagaaactcctcaacagcaagatgcct
agcagaagatcacgcagaggtagaccaaaaaaagaaaaggaagcctcacaacctgctgag
aatgttgtccatcacactatgacagaaacgcagctgatgtgtgaggagggacaagcatcg
gatgaagatctgaagagtgggatcaacaatgcggtaccaagtacaggacaacaaacagat
gaattcagatctccagagcttgctcaaacaggcttaaaatcctgtgtcactattgctgaa
actcaacctatgtgtgaagaagaaccatgtgaagatctgactaaggaagttagcacaggc
cagatagatgaacacaactccacagaactcctaaaaacctccagctcccatttcattgta
gctgaaacacagcctatgcatgaggaagatgaaggacaggagaaacaccttagcagtaaa
acgtcaagcagaagatcacgcagaggaaaagcaaagaaagacagcgaagttccacaaact
tctgaggttgctgttcatcacactatcacagaaacccaaccagttcctgaggaagtgatt
gaaagagatgaagatctgagcagtggaatcaaatccaggagatcccgaaggggaagacag
ataaacgaggacagcgttccacaacctcctgaagctgccgtcagttccctttccactatc
acagaaacactgcctgtttgtgacgatggaactggaagggatgaaaatctgagtatcatc
agatccaaaagatctcacagaggaaaaaaagtagatgaaggtgaaccagcacagtctgtt
gaaccaaactctgatttcatggttgttgaaacacagcccatgtgtgaggaaagcgctcaa
gaagaacctagtggcagaagtagcaggagacctaggaaagacaagacagaggtggagagt
gagacaccttcatctggcaaagtccaaagtaaaaccagaaaagggaaagaagggaaaata
aagagggggaaagcattgtctgaggaagagggagagagtgaagaggaaaaaactgtgagg
agaggaaccagaagaacaggtataaaacataagtgtagtgaaaaggaagaagaggaaaga
ttggaggagagaaatgcccaagcagagaaacagaggatggagaaagagctccaagaacag
gaggagcgagatagggtagagagaaaagaaaaggagagactggagcgtgagagaaaggaa
caagaagagagggaaaaggctgaaactgaaatgaggcaaaaactggaaagagagcagcgg
gaattagaggaaaaacaacgactgaaaagggaagaggaaaaaataagaaaagaaaatgag
agaatacagagggaaaaagaggaaaaggatcgtttagaaaaagaagagaaggaaaagttg
gagagagagagtagagaacgagaagaacaaagacaaaaagaagaagaaagaattcaaatg
gagaaggaacaaaaagagaaggaaagattagcggcagagagagaacaattagaaaaggag
aaagaagaaaatgaggatcttgagatgagagcaagagaacaaaaagaaacggaagatggg
aaccatcaggaagcagaaaagaatgatggattggagaaggacaaaacagaattggaaact
cctcttgttcctcctgccagacgatcacggcgttgttcaagctcctctataaactcggaa
caatctgtatcctcacaacaggagccatccatccagagggcgaggcgaggcaggggacgg
ggtcggggccggggccgaggaagacagacaactaatgagcaaccaatcagtgctagacag
tctagccagagaggagtagctattgaagtagaagacaaagagctagacctcaattcaaca
acccgttcccgatcccgctccagttctagaagttctgagagatctgctaatagtttcata
acgtcaaacgaagggacgaggggaagaggcagaggcaggaagagtgtgaagctacaagaa
ccgcaggaagtttcccaagctaaaacttctgggaaaggcagggggagaagaggcaggcat
tctggtgtggagaatgtaaatgtcgaaatgagccatgagcttgaacaagatgcagagatg
gtaaatgagactgctgtaccccaaagcaacagcagaggtcgcaagagagcagccaccact
agcacatccacagaagaggctccgtcacccacgcccaagactccaaggcgctctgtttcc
agtcaggcgtacaaggtgttattcactgggctgacggatgatgatggagaaaaagtggtc
tctcaattgggtggaagtctggcgagaggggtgaacgatatgactcaactggtgactgat
aaagcaagacgcactgtcaagtttttgtgcgccgttgccagaggggtgccaatcgtgaat
cctgattggctaaagaagtgtggaaaagttgggcatttcctttctactgatgaatacata
ttgaaagatgtcgagcaagagaagaagtttagtttcagcctaaagaagacactgcaaact
gctcaaagtcaacctcttttaaagggttatgagattcatgtaaccccatctgtgatgcca
gaaccatctcaaatgaaagaaatcatcacctgctgtggtgcacgtttcctccctaaaatg
ccttctgctcagaagaagaacactgtggtggtgtcatgtgaacaggacagggcactttgt
cagaaggcagtgagtatgtcattgcctgtggtcagcacagagttcctattgactggtatt
ctgcagcagagagttgacctgcaggcctattctctcacttcctctctcaacacatccaat
cagcctgcagcccccaaagctgctgccaggggccgtaggaagtag

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