Pimephales promelas (fathead minnow): 120484467
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Entry
120484467 CDS
T08155
Symbol
cnot3a
Name
(RefSeq) CCR4-NOT transcription complex subunit 3a isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120484467 (cnot3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pprm03019
]
120484467 (cnot3a)
Messenger RNA biogenesis [BR:
pprm03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120484467 (cnot3a)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
120484467 (cnot3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF4407
Motif
Other DBs
NCBI-GeneID:
120484467
NCBI-ProteinID:
XP_039535571
LinkDB
All DBs
Position
Unknown
AA seq
912 aa
AA seq
DB search
MADKRKLQGEIDRCLKKVAEGVEQFEDIWKKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLVENRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQKE
KEETEQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKEKQDRIEELKRLIERHRYHI
RMLETILRMLDNDSIQVEAIHKIKDDVEYYIDSSQDPDFEENEFLYDDLDLEDIPAALMA
TSPQGQMEDEMFLQSSSTPTSTTSSSPIPPSPATGTMEISEDKRGRSTDSEVSQNHTDLE
QHEEMTEMSFWSPVKNGNPSLSSFSSSASSGSSSSSSSLVSMATVVGACTAVSGGSNLLG
SFSSAVQQHSSQSQQQAQVKLSSTSAPSNNTPSPPSHPTLPASTTSSLPSSSTSGSVTCN
SQSQASTVPGVEGSRLGLGLGKGGVTVTSSSSVTQMPVLGMAGISGPLSTMAGLLSGSTP
APYAQAAAGGTVGSASSGPVGNGSGSSGISVPGGGAVGASTGATSNGTGTGASMGLLGSS
PGHGALTGGILNLVPGQTALHGSAQVPVSPVGTTPSGGTGESLLGGNGSSSVSSGGVGTN
VAPARPPSGLKQNGATSYSAVVADNTPDSSLSSASQSQNSHSTSSSSSTNQTLDNGPSLL
SSITLPPSSPSPAFTDSTPGGGSLLNGPHSYTPNTEAIKAPEPPSSLKAMAERAALGLAL
DVEIAPLELFSTSSAPPGPTTAPQPAVSEVNLPPSLGACPLGPTPLTKEQLYQQAMQESA
WTHMPHPSDSERIRQYLMRNPCPTPPFHHQVPPHHSDSIEFYQRLSTETLFFIFYYLEGT
KAQYLSAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFT
FEYRYLEDRDLQ
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
atggctgataaaagaaaacttcaaggtgaaatagatcgatgtttgaaaaaagttgctgaa
ggagtcgaacagtttgaagacatttggaaaaagcttcacaatgcagccaatgccaaccag
aaggaaaaatatgaggcagatctcaaaaaagagattaaaaagcttcagcgactaagagat
cagattaagacatgggtggcatccaatgagatcaaagacaaacggcagctagtggagaac
cgcaagcttattgaaacgcaaatggagcgctttaaggtggttgaaagagaaactaagaca
aaggcctactctaaagagggactgggcttggctcagaaagtagatccagcacagaaagag
aaggaggaaacggaacagtggctcacgaacacaatagacactttgaacatgcaggtggac
cagtttgagagtgaagttgagtccctctctgttcaaacacgaaagaagaaaggagacaaa
gagaaacaggatcgaattgaggagctaaagaggttaatcgaaagacacaggtaccacatt
cgtatgttagagaccatcttgaggatgctggataatgattcaatccaggttgaagctatc
cataagattaaagatgatgtggaatactacattgactcttcacaagacccagattttgaa
gagaatgagttcctctatgatgatctggacttggaagatataccggcagccttgatggcc
acatctcctcagggccagatggaagatgaaatgttccttcagtccagcagcacgccgacc
tccaccacttcctcttcccccatccctccgtctcctgctacaggcacaatggagatttca
gaggataagagaggtcgatcaacagacagtgaagtcagtcagaatcatacagatttggaa
caacatgaggaaatgacagaaatgtcattttggtctcctgtgaagaatggaaacccatct
ctctcatccttttcttcgtctgcctcctctggctcctcctcctcctcctcatcactggtt
tccatggctactgttgtcggggcctgcacagcggtctccgggggtagcaacctgctggga
agctttagcagcgcagtgcagcagcattcttctcagtctcaacagcaagcacaggtcaaa
ctttcctcaacatctgcaccctcaaacaacacacccagcccacctagccaccccacgtta
cctgcctccacgacttcctctctgcccagttccagcacttccggctcagttacttgcaat
tcccagtcccaggcttcaacagttcctggggtcgagggttctagactgggtttgggcctg
gggaaaggcggtgtgacagtcaccagcagcagtagtgtgactcagatgccagttctgggc
atggcaggcatctctggccctctcagcactatggcaggacttctctcaggctctacccct
gccccctatgcccaggcagctgcaggcggaacagtaggtagtgcttccagtggtccagtg
gggaacggcagtggtagttctggcatatctgtaccgggcggaggtgcagtgggtgcaagc
acaggcgcgaccagtaacggtacgggtactggggcaagtatgggcttgctagggtccagt
ccgggtcatggagcccttacaggagggattctgaacctggtaccggggcagacggctctc
cacgggtctgcgcaggtacccgtaagccctgtgggcacaacacctagtggaggaactgga
gagagcctattgggtgggaatggaagcagttctgtgtcgagtggaggagtagggacaaac
gtagcgcctgcaagacctcccagtggcctcaaacaaaacggagcaaccagttatagtgct
gtggttgcagataacacaccagactcctcactcagcagtgccagccaatcacaaaacagc
cattccacgtcctcaagctcatcaaccaatcaaactctggataatggccccagtttattg
agttctatcactctacccccctcctccccatcacctgctttcactgacagcacacctggt
ggtgggagtctgctaaatggcccacactcctacacaccaaacacagaagctatcaaggct
cctgaaccaccaagctctctaaaagctatggcagagcgagctgcactaggattggcactg
gatgtagaaattgcacccttagagctgttctcaacatcctcagctccacctggacccaca
acggcccctcagccagctgtttcagaggtcaacctgccgccatctttaggggcgtgtccg
ctaggccccacacctctcactaaagagcagctttaccagcaggcaatgcaggagtcagca
tggacacacatgcctcacccatccgattcagagagaatcaggcagtacctgatgagaaac
ccctgtcctacaccgccattccaccaccaggtgcccccacatcattcggactctattgag
ttctaccagagattgtccactgaaacactcttcttcatattctactacctggagggcaca
aaggcacagtacctgtcggccaaagcactgaagaagcaatcgtggaggttccacaccaaa
tacatgatgtggtttcaacggcacgaggaacccaagaccatcactgatgaatttgaacag
ggcacgtacatttactttgactatgaaaagtggggccagagaaaaaaggaaggatttacg
tttgagtacagatacctggaagacagagacctgcagtga
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