Pimephales promelas (fathead minnow): 120484538
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Entry
120484538 CDS
T08155
Symbol
ddx61
Name
(RefSeq) probable ATP-dependent RNA helicase DDX6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120484538 (ddx61)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pprm03019
]
120484538 (ddx61)
03036 Chromosome and associated proteins [BR:
pprm03036
]
120484538 (ddx61)
Enzymes [BR:
pprm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120484538 (ddx61)
Messenger RNA biogenesis [BR:
pprm03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
120484538 (ddx61)
mRNA degradation factors
5'-3' decay
Decapping complex
120484538 (ddx61)
Chromosome and associated proteins [BR:
pprm03036
]
Eukaryotic type
Gene silencing
piRNA pathway
120484538 (ddx61)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
120484538
NCBI-ProteinID:
XP_039535695
LinkDB
All DBs
Position
Unknown
AA seq
483 aa
AA seq
DB search
MATARTEIPASVMQLTKQNGQSKPMTLQSGSLTSSTQSGKTPVMLQKGSSIPRSSGGIRF
GDDWKKCLQLPPKDMRVRTTDVTATKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIP
IVLSGRDILARAKNGTGKSGAYLIPLLERIDLKKDHVQALVMVPTRELALQVSQISINMS
KHLGGVKVMATTGGTNLRDDIMRLDETVHVIIATPGRILDLIKKGVAKVDKAQMVVMDEA
DKLLSQDFVVLIEDIISFLPKNRQILLYSATFPTSVQKFMSKHLQKPYEINLMDELTLKG
ITQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYIHAKM
MQEYRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRY
GHLGLAINLITSEDRFNLKGIEDQLVTDIKPIPSSIDKSLYVAEFHSLNPDEEEAAHKAG
ELN
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atggctacagcaagaacagagatccctgcttcagtcatgcaactgaccaaacagaatgga
cagtccaagcctatgaccctccagtcaggatcacttacttcctcaacacagtcaggaaaa
acccctgtgatgctccagaaaggaagcagtataccccgaagcagtggcggtatcaggttt
ggagatgactggaagaagtgcctgcaacttccaccgaaagacatgagagtgcgaaccaca
gatgtgactgctacaaaggggaacgagtttgaagattactgccttaagagggaactgctg
atgggtatatttgaaatgggctgggagaagccttcccctatccaggaggagagtattcct
attgtcttgtcagggagggacattctcgcccgagctaaaaatggcacaggtaaaagtgga
gcctacctcatccccctcttggaaaggattgatctgaagaaagaccatgttcaagccttg
gtaatggtaccaactcgtgagttggctctgcaggtgagccagataagtatcaacatgagc
aagcaccttggtggcgtcaaggttatggctacaacaggtggcaccaacctgagggatgac
atcatgcgtcttgatgagactgtacatgttataatagctaccccaggaagaatccttgac
ttgataaagaaaggtgtggccaaggttgacaaagctcagatggttgtgatggatgaggct
gataagttgctttctcaagactttgtggtgcttattgaggacatcattagcttcctgccc
aaaaaccgtcagattcttctctactctgccactttccccaccagtgtgcagaaatttatg
tccaaacaccttcagaagccatacgaaatcaatctgatggatgagctcacactgaaaggc
atcactcagtactacgcctatgtgacagaaagacagaaagtgcactgtctcaacacactg
ttctcaaggctccaaatcaaccagtctatcatcttctgtaattccactcaacgggtggaa
ctccttgccaagaagatcacacagcttggctattcttgcttttacatccatgccaagatg
atgcaggaatacagaaatcgtgtgttccacgacttcagaaacggactgtgtagaaacctg
gtctgcacagatcttttcacaagaggaattgacatccaggctgtcaatgtcgtcatcaac
tttgacttccccaaaaatgcagagacatacttgcaccgtattggtcgatcaggtaggtat
ggtcacctgggtctggccattaacctgatcacctcagaagaccgtttcaatctaaagggc
attgaggaccagttggtgactgacataaagcccatacccagcagcattgataagagcctg
tatgtggcagagtttcactccctgaaccctgatgaggaggaggctgctcacaaagcaggc
gagcttaattaa
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