Pimephales promelas (fathead minnow): 120484578
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Entry
120484578 CDS
T08155
Symbol
vars1
Name
(RefSeq) valine--tRNA ligase
KO
K01873
valyl-tRNA synthetase [EC:
6.1.1.9
]
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm00970
Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
120484578 (vars1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
pprm01007
]
120484578 (vars1)
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pprm03016
]
120484578 (vars1)
Enzymes [BR:
pprm01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.9 valine---tRNA ligase
120484578 (vars1)
Amino acid related enzymes [BR:
pprm01007
]
Aminoacyl-tRNA synthetase
Class I (U)
120484578 (vars1)
Transfer RNA biogenesis [BR:
pprm03016
]
Eukaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Other AARSs
120484578 (vars1)
Prokaryotic type
120484578 (vars1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
tRNA-synt_1
Anticodon_1
GST_C
tRNA-synt_1g
tRNA-synt_1_2
GST_C_2
Val_tRNA-synt_C
Arc1p_N_like
tRNA-synt_1e
Jag_N
GST_C_3
Motif
Other DBs
NCBI-GeneID:
120484578
NCBI-ProteinID:
XP_039535781
LinkDB
All DBs
Position
Unknown
AA seq
1273 aa
AA seq
DB search
MDTLYISSHPDDFRSLLPLIAAEFCRSPPRIVHEDPPAEVSRSRPALVLEGAGGTVLTGA
NAVSWYLAAAGKRTGCDKKQESQVWQWLSFAENELMPVACSVAFPLLGIMGVDKKLLQSS
RAELLRVLKALDEALAPRTFLVGEGVTLADMAVAMAALLPFKYALEPSDRKSLVNVTRWF
NTCVNQPQFLKVLGKISLCEKMVPVTPKPSAAANATSTAASDAATPDNTASNGPPKTEAQ
LKKEAKKREKLEKFQQKKEIEEKKKMQPQTEKKAKPEKKELGVISYNIPTPSGEKKDVLS
PLPDSYSPQYVEAAWYSWWEKQGFFKPEYGRKNVSEPNPRGVFMMCIPPPNVTGSLHLGH
ALTNAIQDSLTRWHRMRGETTLWNPGCDHAGIATQVVVEKKLMRERKMTRHDLGREKFIQ
EVWKWKNEKGDRIYHQLKKLGSSLDWDRACFTMDTKLSFAVQEAFIRMHEEGVIYRSKRL
VNWSCTLNSAISDIEVDKKELTGRTLLPVPGYKEKVEFGVLVSFSYKIEGSDEEVVVATT
RIETMLGDTAVAVHPNDPRYQHLKGKMVVHPFCDRKMPIVFDDFVDMNFGTGAVKITPAH
DHNDYEVGERHKLPFINILDENGLLINVPPPFLGVKRFEARKTVLQALKDRGQFKEVKDN
PMVVPVCSRSKDIVEPLLKPQWYVDCREMGKQAADAVRNGELKIIPDHHLKTWFNWMDNI
RDWCISRQLWWGHRIPAYFVTVNDSAVKPGEDVDGHYWVSGRSEEEAREKAAKRFNVTAD
KISLRQDEDVLDTWFSSGIFPFSIFGWPNESEDLRVFYPGTLLETGHDILFFWVARMVMM
GLKLTGKLPFKEVYLHAVVRDAHGRKMSKSLGNVIDPLDVITGISLEGLHSQLIDSNLDP
LEIEKAKQGQKSDYPSGIPECGTDALRFALCAYTGQGRDINLDVNRILGYRHFCNKLWNA
VKFAMRTLGEGFVPCQKAQLCGSESVSDRWILSRLSAAVALCDNGFQGYDFPTITTAIYN
FWLYELCDVYLESVKPVLSRTDSQGQKQADICRQTLYTCLEVGLCLLSPIMPFVSEELFQ
RLPRRQAQDSPPSISVTPYPDPSQFCWHSEEVDRQMEFVMSVVRTIRSLRADYNLTKTRA
DCYLQCIDSDTAALVQTYSLQIQTLSYSQTIHPVVGGDNAIPQGCAVAIASDKCTVHLML
KGLIDLEKEVTKLTAKEAELGKQMEKMKEKMAKNDYKDKVPVKVQEADAEKLRQNETELQ
KVKEAIENFRKMM
NT seq
3822 nt
NT seq
+upstream
nt +downstream
nt
atggacactctttacatctcttcgcaccctgatgacttcaggagtttgttacccttaatc
gctgctgaattctgccgatctcctccacgaatagtccatgaggaccctccggctgaggtg
agcaggtctcgtcctgcactggtcttagagggtgcgggcggcacggtgctcaccggagcc
aatgctgtgagctggtacctggcagcagcggggaaacggacaggctgcgataagaagcag
gaaagtcaggtgtggcaatggctgagctttgctgagaacgagctgatgcctgtggcctgc
tctgtggcattccctctgctggggatcatgggagttgataagaagcttctgcagagttcc
agagcagagctacttcgtgttctcaaagctctagatgaggctctagcaccgcggacattc
ctggtaggagagggtgtgactctggctgatatggctgttgctatggcagcactgctgcca
ttcaaatatgcattggagccttcagacaggaagtccttggtgaatgtgaccagatggttt
aatacatgtgtgaaccagccacaattcctgaaggtgttgggtaaaatctcactgtgtgag
aaaatggtgcccgtgacccccaaacccagcgctgccgccaatgccacatcaactgctgct
tctgacgctgctacgccagacaacacagctagtaatggtcctcctaagacagaggctcag
ctgaagaaagaggccaagaagcgagaaaagttggagaagtttcaacaaaagaaagagatt
gaggagaagaagaagatgcagcctcagactgagaaaaaggccaaaccggagaagaaggaa
ctgggtgtgataagctacaacatacccacgccttctggagagaaaaaagatgtcctgagt
cctctgcctgattcttacagtcctcagtatgtagaagcggcctggtactcctggtgggaa
aaacagggatttttcaagcctgaatatgggagaaagaatgtaagtgagccaaacccacgt
ggcgtgttcatgatgtgtattcctccacctaatgtgactggatccctccaccttggtcac
gccttgaccaatgcaattcaggactcgctgactagatggcacaggatgagaggagagacc
actctgtggaatcccggctgtgatcacgctggtatcgccacacaggtggtggtggagaag
aaactgatgagagagcgaaagatgaccagacacgatctcgggagagagaagttcatccag
gaggtctggaagtggaagaacgaaaagggagatcgcatctatcatcagctgaagaagctg
ggctcctctctggactgggacagagcttgttttaccatggatactaaactatcatttgcg
gtccaggaggcatttatacgtatgcatgaggaaggtgtgatttatagaagtaagagactc
gtcaactggtcctgcaccctcaactctgccatctctgacatagaggtcgataaaaaggag
ctgacagggcgaacccttcttcctgtgccgggctataaggaaaaagtcgagtttggcgtg
ctggtgtctttctcttacaagattgaaggatcagatgaggaggtggtagtggccaccaca
cgtattgagaccatgcttggagacacagctgtggccgtccatcctaatgaccccagatat
cagcatctcaaaggaaagatggtcgttcacccattctgtgacagaaagatgcccatcgtg
tttgatgactttgttgatatgaactttggaacaggtgctgtgaagatcactcctgctcat
gaccataatgattatgaggtgggagagagacacaaactacccttcatcaacatcctcgat
gaaaatggtctactaatcaatgttcctcctccattcctgggggtgaagcgctttgaggcg
aggaaaactgtgctccaggctctgaaagacagaggccagtttaaggaggtcaaagacaat
ccgatggtggtgcccgtctgcagccgttctaaggacatagtggagcctctgctgaagcct
cagtggtacgtggactgcagagagatgggaaagcaggctgcagatgccgtcagaaatgga
gagctcaagatcatccctgaccaccacctcaaaacctggttcaactggatggacaacatc
agggactggtgcatctcacggcagttgtggtggggccaccggataccagcgtactttgtg
accgtgaatgattctgcagtcaaaccaggcgaggatgtggatggacattattgggtcagc
gggagatctgaggaggaagccagagaaaaagctgccaaacgcttcaatgtcactgcagac
aaaatctctctacgccaggatgaggatgtgttggacacttggttctcctcagggatcttc
cccttctccatctttggctggcccaatgagtcagaggacctgagagtcttttacccagga
acactgttggagacgggccatgatatcctgttcttctgggtggctcgtatggtcatgatg
ggcctcaaacttactggaaaactacctttcaaagaggtgtacctgcatgcagtggtacga
gacgcccatggcaggaaaatgagcaagtctcttggtaacgtcatcgaccctctggacgtc
atcactggcatttcactggagggtcttcactctcaactaatagacagtaatctagaccct
ctggagattgagaaggccaaacagggacagaaatccgactatcccagtggaattccagaa
tgtgggactgacgcgctcagatttgctctatgtgcttataccggtcaaggccgagacatt
aatctggacgtgaacaggattctgggatacaggcatttctgtaacaagctgtggaacgca
gtgaagtttgccatgaggaccctgggagagggatttgttccctgccaaaaagctcagctg
tgtggcagtgaaagtgtgtctgatcgctggattctgtcccgtctgagcgcagcagttgcg
ctgtgtgataacggattccagggctacgattttccgacaatcaccactgccatttacaat
ttctggctgtacgagctctgtgatgtttatctggaaagtgtgaagccggtgttgagcagg
acagattcacaagggcaaaaacaggcagacatctgcagacagactctctacacctgtctg
gaggtgggactctgtctcctgtctcctatcatgccttttgtttctgaagagctcttccag
cggttgccaagaagacaagctcaggacagcccccccagcatcagtgtcacaccttaccca
gacccttcacagttctgttggcacagcgaggaggtcgaccgtcagatggagtttgtcatg
tctgtggtcagaaccatccgatcactccgggccgattacaacctgaccaagacccgcgct
gactgttacctgcagtgcatcgactctgatactgcggctctggtccagacatacagcctt
cagatccagacactgtcttactctcagaccattcacccagtcgttggaggcgacaacgct
atcccacaaggctgtgcggtggccatcgcctcggacaaatgcactgttcacctaatgctg
aagggtttgattgacttggaaaaggaggtcacgaaactgacggcaaaggaagcggagctg
gggaaacagatggaaaagatgaaggaaaagatggctaagaatgactacaaggacaaagtt
cctgttaaagtgcaggaggcagatgctgagaagctgaggcagaatgaaacagaactgcag
aaagtgaaggaagccatcgagaacttccgaaaaatgatgtaa
DBGET
integrated database retrieval system
