KEGG   Pimephales promelas (fathead minnow): 120484982
Entry
120484982         CDS       T08155                                 
Symbol
snrnp40
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
pprm  Pimephales promelas (fathead minnow)
Pathway
pprm03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pprm00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    120484982 (snrnp40)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pprm03041]
    120484982 (snrnp40)
Spliceosome [BR:pprm03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    120484982 (snrnp40)
 Complex C
   U5 SnRNP specific factors
    120484982 (snrnp40)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz Beta-prop_TEP1_2nd WD40_WDHD1_1st EIF3I WDR55 Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_EML Beta-prop_WDR75_1st Beta-prop_SPT8 NBCH_WD40 Beta-prop_SCAP Beta-prop_IFT122_1st ANAPC4_WD40 WDR90_beta-prop_4th Beta-prop_EIPR1 WD40_MABP1-WDR62_1st Beta-prop_RIG_2nd Beta-prop_DCAF4 Beta-prop_WDR19_1st WD40_RFWD3 Beta-prop_Vps41 Beta-prop_IFT140_1st Beta-prop_WDR75_2nd Beta-prop_WDR35_TULP_N eIF2A Cytochrom_D1 Beta-prop_Nup120_160 WD40_like
Other DBs
NCBI-GeneID: 120484982
NCBI-ProteinID: XP_039536373
LinkDB
Position
Unknown
AA seq 347 aa
MIEPKKRGLEMAVVPVGVKRPRTELVSAAQSQQLSAMGPPRSSSLQAPIMLLSGHEGEVY
CCKFHPNGATLASSGYDRLILMWNVYGECENYATLKGHTGAVMELHYNTDGSLLFSASTD
KTVCVWDSETGERVKRLKGHTSFVNSCFPARRGPQLACTGSDDGTVKLWDIRKKASVHTF
QNTYQVLSVTFNDTSDQIISGGIDNDIKVWDLRQNKLIYSMQGHGDSVTGLSLSADGSYL
LSNSMDNSVRVWDIRPFAPKERCVKIFQGNVHNFEKNLLRCCWSPDGGKIAAGSADRFVY
IWDTTTRRILYKLPGHAGSVNEVAFHPEEPIVLSGSSDKRLYIGEIQ
NT seq 1044 nt   +upstreamnt  +downstreamnt
atgatcgaaccgaagaagcgcggtttagagatggcagtcgttcccgtcggtgtgaagaga
cctcggacagaactggtgtctgcagcgcagtcgcaacaactctctgctatggggcccccc
cgcagctccagtctgcaggctcccataatgctgctctccggtcacgaaggggaagtttac
tgctgcaagtttcaccccaatggagccacactagcctcttctggatatgaccgcctcatc
ttgatgtggaatgtctatggagaatgtgagaattatgccacgcttaaaggccacactgga
gctgtgatggagcttcattataatacggacggcagtctgctgttctcagccagtacagac
aagaccgtatgcgtgtgggacagtgagacaggggagcgtgtgaagcgtctgaaaggtcac
acgtcctttgtgaactcatgttttccggctcgccgtggcccacagctggcctgtacaggc
agcgatgatggaactgtaaagctgtgggacatcaggaagaaggcctctgttcacacgttc
cagaacacctatcaggttcttagtgtgacattcaatgacaccagtgaccagatcatctca
ggaggcatcgacaacgacataaaggtgtgggacctcagacaaaacaaattgatttacagt
atgcagggtcatggagactctgtgaccggtctgagtctcagcgcagatggatcctacctg
ctctctaactccatggataacagcgtgcgtgtctgggatatccgtccatttgcgccaaag
gagaggtgtgtgaagatctttcagggaaatgtccataattttgagaagaatcttctcaga
tgctgttggtctcctgatggggggaagattgcagccggttctgctgacaggtttgtgtat
atctgggacacaacaactcgtaggatcctttataagctgcctggtcatgctgggtctgta
aatgaggtggctttccatccagaagaacccattgttctctctggatccagtgataagcgc
ctctacatcggagagattcagtaa

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