Pimephales promelas (fathead minnow): 120485165
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Entry
120485165 CDS
T08155
Symbol
ddx39b
Name
(RefSeq) DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm03013
Nucleocytoplasmic transport
pprm03015
mRNA surveillance pathway
pprm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120485165 (ddx39b)
09122 Translation
03013 Nucleocytoplasmic transport
120485165 (ddx39b)
03015 mRNA surveillance pathway
120485165 (ddx39b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pprm03019
]
120485165 (ddx39b)
03041 Spliceosome [BR:
pprm03041
]
120485165 (ddx39b)
Enzymes [BR:
pprm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120485165 (ddx39b)
Messenger RNA biogenesis [BR:
pprm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
120485165 (ddx39b)
Spliceosome [BR:
pprm03041
]
Complex C
Other components
EJC/TREX
120485165 (ddx39b)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
120485165 (ddx39b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
120485165
NCBI-ProteinID:
XP_039536670
LinkDB
All DBs
Position
Unknown
AA seq
459 aa
AA seq
DB search
MTLRTYPAGSSRCSEKSNCFIQHFEMTENDVDNELLDYEEDEVDGVAGDTGLGHSDSVIS
IRKEGVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQA
KSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVAVFF
GGLSIKKDEEVLKRESPHVVVGTPGRILALSRNKSLNLRHIKHFILDECDKMLEQLDMRR
DVQEIFRMTPHEKQVMMFSATLSKEIRPICRKFMQDPMEIFVDDETKLTLHGLQQYYVKL
KDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRAMLQDERLAR
YQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAIT
FVSDESDARTLNDVQDRFEVNISELPEEIDISSYIEQTR
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atgacgttgcgaacgtatccagcaggcagcagcaggtgtagtgaaaaatccaactgcttc
atacagcatttcgagatgacggagaacgacgttgataatgagctgttagactatgaggag
gatgaagttgatggcgttgctggagatacagggcttggacacagcgacagtgtcatatcc
atcaggaaagaaggggtcaaagggtcatacgtgtccatccactcctcaggattcagggat
ttccttctcaaaccagaactcctgagagctatagtagactgtggctttgagcatccatct
gaggttcagcatgaatgcattcctcaggcgatcttggggatggacgtattgtgtcaggcc
aagtctggaatggggaagacggctgtctttgtgttggccacccttcagcagctggagcca
gtgaccggtcaggtatcagtgttggtgatgtgtcatactcgagaactggcgttccagatc
agcaaagagtatgagcgcttctccaaatacatgccgagtgtcaaggtggcagtgttcttt
gggggtttatctataaagaaggatgaggaggtgctgaagagagagagccctcatgtggtg
gtgggaactcctggacgtattttagctctgtctcgcaacaagagtctcaacctgcgacac
atcaagcacttcatccttgatgaatgcgacaagatgctggagcaacttgacatgcggcgg
gatgtccaggaaatctttcgcatgacccctcacgagaagcaagtcatgatgttcagtgct
accctgagtaaagagatccgtcccatctgtagaaagttcatgcaagatccgatggaaatt
tttgtggacgacgagaccaagctgacgcttcacggcctccagcagtactacgtcaaactg
aaggacaacgagaagaacaggaagctctttgacctcttggatgtgttggagttcaaccag
gtggtgatcttcgttaaatcggtgcagcgttgtatcgctcttgctcagttgctggtggag
caaaatttccctgccattgccattcatagagcgatgcttcaagatgaaagactagctcga
tatcagcaatttaaggatttccagagacgaatcctggtggccacaaacctgtttggccga
ggtatggacatcgaaagggtcaacattgcgttcaactacgacatgcctgaagattcggac
acgtacctgcatagggttgctagagccggcaggtttggaaccaaaggtctggccatcacc
tttgtgtcagatgagtctgacgcgcgcactttgaacgatgttcaggacaggtttgaggtg
aacatcagcgagcttccagaggagatcgacatctcgtcgtacattgaacaaacccgataa
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