Pimephales promelas (fathead minnow): 120485196
Help
Entry
120485196 CDS
T08155
Symbol
pabpc1b
Name
(RefSeq) polyadenylate-binding protein 1b isoform X1
KO
K13126
polyadenylate-binding protein
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm03015
mRNA surveillance pathway
pprm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120485196 (pabpc1b)
09123 Folding, sorting and degradation
03018 RNA degradation
120485196 (pabpc1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pprm03019
]
120485196 (pabpc1b)
03041 Spliceosome [BR:
pprm03041
]
120485196 (pabpc1b)
Messenger RNA biogenesis [BR:
pprm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
120485196 (pabpc1b)
mRNA cycle factors
Stress granule specific factors
120485196 (pabpc1b)
Spliceosome [BR:
pprm03041
]
Complex C
Other components
Complex C specific factors
120485196 (pabpc1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RBD_DEAH11
RRM_10
RRM_7
RBD_RDR6
RRM_occluded
RRM_3
HTH_58
Motif
Other DBs
NCBI-GeneID:
120485196
NCBI-ProteinID:
XP_039536735
LinkDB
All DBs
Position
Unknown
AA seq
633 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAKEFTNVYIKNFGEDMDDDKLKDVFSKYGNSMSIRVMTDENGKSRGFGFVSFER
HEDAQRAVDEMNGKELNGKLIYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKN
LDDGIDDERLRKEFAPFGTITSAKVMMDGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQAQNRA
AYYPTSQLAQLRPSPRWATQGVRPQHFQNMPGTMRPSAPRPQTFSTMRPASQVPRMMSTQ
RVAAQTMGPRPSIAAAAASAPPVRGVPQYKYAPSVRNPQHMNTQPQVTMQQPAVHVQGQE
PLTASMLAAAPPQEQKQMLGERLFPLIQNMHPSLAGKITGMLLEIDNSELLHMLESPESL
RSKVDEAVAVLQAHQAKEAAQKTVTNSTGVPSV
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccagcgctcctagttaccccatggcatcgctgtatgttggggacctgcaccag
gacgtgactgaagccatgctctacgagaagtttagcccggccggtgccatcctctccatc
cgcgtgtgcagggacatgatcacccgcaggtcgctcggctatgcctatgtcaactttcag
cagcctgcagacgctgaacgggctttagacacaatgaactttgacgtcatcaagggtaga
cctgtccgcatcatgtggtctcagcgggacccctctctgaggaaaagcggcgttggaaac
atctttattaaaaacttggataagtctattgataacaaagccctttatgacaccttctct
gcgtttggcaacatcctgtcgtgcaaggtggtttgtgatgagaatggctcaaagggctac
ggctttgtacactttgagacccaggaggctgccgaaagagccattgagaaaatgaacggc
atgttgctgaatgacagaaaagtgtttgtagggcgcttcaaatctcgcaaggagagggag
gctgagctcggtgcaagagccaaagaatttaccaatgtgtacattaaaaattttggggaa
gatatggatgatgacaagctcaaggacgtcttcagcaaatatggtaattctatgagcatc
cgtgtcatgactgatgaaaatgggaagtccagaggctttggatttgtgagttttgagaga
cacgaggatgcgcagagggctgtggatgagatgaatggcaaagaactgaatgggaagctt
atctatgtgggtcgtgctcagaaaaaagtggagcgccaaactgagctcaagcgcaaattt
gagcagatgaagcaagaccggatgactcggtaccagggtgtcaatctctatgttaagaac
ttggatgatggtattgatgatgagcgtcttcgtaaagagtttgctccctttggaacaatc
accagtgccaaggtcatgatggatggtgggcgcagtaaaggctttggttttgtctgtttc
tcttcccctgaggaagccactaaagcagtgactgagatgaatggccgtattgtggccact
aagcccctgtatgtggctcttgctcagcgcaaagaggaacggcaggcccatctcaccaac
cagtacatgcagaggatggccagcgtccgtgcagtgccaaacccagttatcaacccctac
caacccgcacctccgtcaggatacttcatggctgccatcccgcaggcccagaacagagct
gcatattaccctaccagtcagctcgcgcagctcagacctagtccccgctgggccactcag
ggtgtacgtcctcagcacttccaaaacatgccaggcacaatgcgcccatctgcccccaga
cctcagactttcagcaccatgcgtcctgcatcacaagtgccccgcatgatgtccactcag
cgtgttgccgctcagactatgggtccacggccctccattgcggcggctgcagcctctgcc
cctccagttcgcggcgtgcctcagtacaaatacgcacccagcgtccgcaaccctcagcac
atgaacacacagcctcaggtcactatgcagcagcctgctgtgcatgtgcaaggacaggaa
cccctgacggcctccatgctcgccgctgctcctccacaggaacagaagcagatgctgggt
gagcgtctcttcccacttatccagaatatgcaccccagcctggctggcaagatcaccggt
atgctgctggaaatcgacaactctgagcttctccacatgctggagtctccggagtctctg
cgctccaaggttgacgaggcagtggccgtacttcaggctcaccaggctaaagaagccgct
caaaaaaccgtgaccaactctactggcgtgccaagcgtttaa
DBGET
integrated database retrieval system
