Pimephales promelas (fathead minnow): 120485295 Help Entry 120485295         CDS       T08155                                  Symbol skiv2l Name (RefSeq) helicase SKI2W   KO K12599   antiviral helicase SKI2 [EC:5.6.2.6] Organism pprm  Pimephales promelas (fathead minnow) Pathway pprm03018   RNA degradation Brite KEGG Orthology (KO) [BR:pprm00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    03018 RNA degradation     120485295 (skiv2l)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:pprm03019]     120485295 (skiv2l) Enzymes [BR:pprm01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.6  RNA 3'-5' helicase      120485295 (skiv2l) Messenger RNA biogenesis [BR:pprm03019]  Eukaryotic type   mRNA surveillance and transport factors    Transport factors     eIF4F and regulatory proteins      120485295 (skiv2l)   mRNA degradation factors    3'-5' decay     Ski complex      120485295 (skiv2l) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  DSHCT Ski2_N DEAD MTR4_beta-barrel Helicase_C DEXQc_Suv3 ResIII MTR4-like_stalk DUF3516 HTH_23 Motif Other DBs NCBI-GeneID:  120485295 NCBI-ProteinID:  XP_039536916 LinkDB All DBs Position Unknown AA seq 1251 aa AA seqDB search MDKIVLPPVGPNDLPLSLLEMGCSGRFELITHPLPKNKPLPPHSTLPHGLPPTCLDLKTE VEKRFLRDPAWLPVHDVDDAFHKFLKISKRDKDVDSLLHCSLSPLHSGLSVVRDPTTGML LDFTEVLLEDTGLSAKNSLSLQRQPGPPSESLRGSNTNYPFLPGGMEELTLEQIKKKSEL EEDIDFEKDLLTVPPGLKAGMDFSDKEARTMKSEVNLLSLLSTFDDVLDALPEEKEGASQ KEETVKLPRTNSLEDLGIKDSSNTPSQPPANTVSLTEQKKKPQEDDKGDNKKWAIPVDIT SPCDDFYKRIPNPAFKYPFELDVFQKQAILRLEAHDSVFVAAHTSAGKTVVAEYAIALSQ KHMTRTIYTSPIKALSNQKFRDFKNTFGDVGLLTGDVQLNPEASCLIMTTEILRSMLYNG SEVIRDLEWVIFDEVHYINDAERGVVWEEVLIMLPEHVSIILLSATVPNSVEFSEWIGRI KKRHIYVISTIKRPVPLEHYLYTGNSTKTQKELFLLLDPSGNFLTKGYYAAVDAKKERTS KHAQSFGSKNVSQHNTTASQDRSVWQTLLNYLSQRQQTPVVAFTFSRTRCDENARSLTSL DLTSSIEKSEIHSFLQKSLTRLRGADRQLPQILLMRDLLKRGIGVHHSGILPILKEVIEM LFSKGLVKVLFATETFAMGVNMPARTVVFDSIRKHDGTGFRNLLPGEYIQMAGRAGRRGL DATGTVIILCKAGVHEMGDLHAMMLGKPTVLQSQFRLTYTMILNLLRVEALRVTDMMRRS FSENHRDTQTHEKRITELRNTLSSLPPLDTEGQLSDLLSYYHTITELRITTETLQRAVLE SVNGLKALSVGRVVMVNNSQHHNALGVILQVSSDAVNRTFTALIICEKGNEESAGDDQSN KVSLPIYSTALFIPEGPCSHTVQKLKLQDISAITTKTLKVIPERIIDNYNKRQQPRFRLD PPGQAISTATQELLRLAEANPRGVTTFDPVNDLHLKGVDVVEGVMRQRVLHDCLKDFHCI HSPTFTEQFARVQERMSVQEELDQLLFLVSDQSLTLLPEYHQRIKVLEALQYVDSTGAVQ LKGRVACQISSHELLLTELLFENTLSPLAPEESAALLSCLIFTQNTQIEPHITNTLQEGI NQVLCVAQRIGELQRDCGIGQTAEDFVGQFKFGLTEVVYCWARGMPFAEIAALTDVQEGT IVRCIQRLDEVLKEVRQAARIVGDSVLGSKMERASLAIRRDIVFTASLYTH NT seq 3756 nt NT seq  +upstreamnt  +downstreamnt atggacaaaatagttttgcccccagttggtcctaatgatttgcccctgtctctgcttgag atgggctgctctgggagatttgagctcatcacacacccactgcccaaaaacaaacccttg cctccacacagcactctccctcatgggcttcctcctacttgtctggacttaaaaacagag gttgaaaagcgttttctgcgagatcctgcttggctcccagtacatgatgtagatgatgcc ttccacaagttccttaagataagtaagagggacaaagacgtggactctctcctgcactgc tccctgtctccactgcactctggcctgtctgtggtcagagatcccaccaccggtatgctg ctggatttcactgaggtgttattagaggacacggggttgtctgcaaaaaattctctctca ttacaaagacagcccggacctccgtcagagagcctgagagggagtaacacaaactatcct tttctgccaggcggaatggaggaactaacgttagagcagattaagaaaaagtccgagctg gaagaagacattgactttgagaaagatttgttgacggttcctcctgggctgaaggctggt atggacttcagtgacaaagaagccagaaccatgaagagtgaggtgaacctgctgtcactc ctgtcgacatttgatgatgttcttgacgctctgccagaggagaaagaaggagcgtcacaa aaagaggagactgttaaacttcccagaactaacagcctggaggacctgggaattaaagat tcgagcaacactccttctcagcctccagcgaacactgtaagtctgactgaacaaaagaag aaacctcaggaggatgacaagggagacaataaaaaatgggccatccctgtggatatcacc tcaccctgtgacgatttctacaaacgtatccctaatccagccttcaagtatccctttgag ctggacgtgtttcagaagcaggctattctccgactcgaagctcatgactctgtctttgtt gcggcccacacctcagctggcaagaccgttgtggctgaatacgcaattgcactttcccag aaacacatgaccaggaccatttacacatcccccattaaggccttgtccaatcagaagttc cgggacttcaagaacacgttcggtgacgtgggacttttgactggagatgtccagctgaat cctgaagcctcttgtctcatcatgaccactgagattttgagatctatgctttataacggg tcagaggtcattcgagatctggaatgggtcatttttgatgaggttcactatatcaatgat gcagagagaggagtggtgtgggaggaagtgctcatcatgttgccagaacatgttagcatc atcctgctgagtgccacggtgcctaactcagtggagttcagtgaatggatcgggcgaatc aagaaacggcacatctatgtgatcagcacaattaagaggcctgttcctctagagcactat ctctacaccggcaacagcaccaagactcagaaagagctcttcctgttgctggacccctct ggaaacttcctcactaaaggctactatgccgcagtggacgccaagaaggaacgcacaagt aaacatgcgcagtcttttggctcaaagaacgtatcacagcacaacaccacagccagtcag gatcgatcagtgtggcagacgctgctgaactatctgtctcagaggcagcagactccagtt gtggcgttcacattctctcggacacgctgtgatgaaaacgcccgctctttgacctctctg gacctcaccagctccatagagaagagcgagatacactcgttcctccagaagagcctgacg aggctgagaggagctgatcggcagttaccgcagatcctgttgatgcgtgatttgctaaag agagggattggtgttcaccacagcggcatcctgccaatcctgaaggaggttattgagatg ctcttctccaaaggtttagtcaaggtgctgtttgctacagagacgtttgccatgggcgtg aacatgcccgccagaaccgttgtgttcgacagtatccgcaaacacgacggcacaggtttc agaaacctgctacccggtgagtatattcagatggcaggtcgtgctggcagaagaggtttg gatgctacagggacggtcatcattctctgtaaggctggagttcatgaaatgggagacctc cacgccatgatgctggggaaaccgacagtgctgcagtctcagttcagactgacctacaca atgatcctaaatctgctgcgtgtggaggcccttagggttaccgacatgatgaggaggagc ttttctgagaaccacagggacacacagactcatgagaagagaataactgagctgagaaac acgctctcctctctccctccgctggacacagaaggacagttatctgatttactgtcatat taccacaccatcacagagctgcgcatcaccacagagaccctgcagcgagctgtgctggag tcagtaaatggactcaaagccctgtctgtgggaagggtggtgatggtgaacaacagccag catcataatgccctgggagtcattctacaggtgtccagtgatgcagtaaatcgtacattc actgctctcattatctgcgagaagggaaatgaggagtcggcgggtgatgatcagtctaat aaagtctcacttcccatctacagcactgcgctgtttattccagagggaccctgcagtcat acagtgcagaaactgaagttgcaggacatctcggccatcacaaccaaaaccctcaaagtc attccagagagaatcatcgacaactacaataaaagacagcagccacgcttcagacttgat ccaccaggtcaggctatttccacggcaactcaagagctcttgcgattggccgaggccaat cccaggggcgttacgacctttgaccccgtgaatgacctgcacctgaagggtgtagatgtg gtggagggagtgatgaggcaacgagtgttgcatgactgtctaaaggacttccactgtatc cactcgcccactttcactgaacagtttgcgcgtgtacaggagaggatgagtgtacaggaa gagcttgatcagcttctgttcctggtgtctgatcagtccctgacactgttgcctgagtac catcagagaatcaaggtgctggaagctttgcagtatgtggacagcactggggcggttcag ctgaagggacgtgtggcgtgtcagatcagcagtcatgagctcttactgactgaactcctg tttgagaacactctgagtcctctcgcacctgaggagagcgccgccctgctgtcctgcctc atcttcacacaaaacacccagatagaaccgcacatcaccaacacgctacaggagggcatc aatcaagtactctgtgtagcacaacgtattggtgagctgcagagggattgtgggataggt caaactgctgaagactttgtgggccagttcaagtttggcctgactgaggttgtgtattgc tgggcaagaggcatgccatttgctgagattgccgcgctgacagatgtgcaggaggggacg atcgtgcgctgtatccagaggctggacgaggtcctgaaggaagtgagacaggccgctcgc attgtaggcgactccgtcctgggcagcaagatggaaagagcctcactggccatacgcaga gacatagtgttcactgcctcactctacacacactga

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