Pimephales promelas (fathead minnow): 120486020
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Entry
120486020 CDS
T08155
Symbol
dhx36
Name
(RefSeq) ATP-dependent DNA/RNA helicase DHX36 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120486020 (dhx36)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pprm03019
]
120486020 (dhx36)
03012 Translation factors [BR:
pprm03012
]
120486020 (dhx36)
Enzymes [BR:
pprm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120486020 (dhx36)
Messenger RNA biogenesis [BR:
pprm03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
120486020 (dhx36)
Translation factors [BR:
pprm03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
120486020 (dhx36)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
HA2_C
Helicase_C
OB_NTP_bind
HA2_N
AAA_22
nSTAND3
AAA_19
ATPase
NB-ARC
TsaE
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
120486020
NCBI-ProteinID:
XP_039537791
LinkDB
All DBs
Position
Unknown
AA seq
937 aa
AA seq
DB search
MDHGYGNRRGRREGGRRFGDGESKWDGGAGSSGGAGYPRSSDWDSREEQGHGRGRRGRGG
GRGKHPPHLKGREIGLWYAKWGGIKRSEAERKSRAVVQMDESREQHITQLLNSVQRDLGR
DEHPSTSQSWRVKEEPSGHSYFDGDDPPELPNIVKVPKIEPKEEKREDELGANVKEELND
ADLEYLLQDVVRTASLDEELKKDLEKKKENARYIDMLKFREKLPSYGMREELVKLISANQ
VLVVSGETGCGKTTQVTQFILDDFIQRGVGSLCRVVCTQPRRISAISVAERVASERAEPV
GEGKSCGYQIRLQSRLPRKQGSVLYCTTGIILQWLRSDTYLSSVSHLILDEIHERSLQSD
VLLTIVKDLLIARKDLKVVLMSATLNAEKFSKYFNNCPMIHIPGYTYPVKEFLLEDVVEL
LRFQPKQHDRRPRYKRGFMHGQNARPEKEQKEAEYHESWPCYARTLRDRYSDSTIDTLQM
MDDDEKINLELIVGLIRHIVMKEDDGAILVFLPGWDDISTLHDLIMADQMFKSDRFIIIP
LHSLMPTVSQTQVFKKPPLGVRKIVISTNIAETSITIDDVVYVIDGGKIKETHFDTQNNI
RTMTAEWVSLANAKQRKGRAGRVSPGKCYHLYNGLRASLLDNYQLPEIQRTPLEELCLQI
KILKLGPIACFLRKTLDPPSDKAIELAITHLVDLNALDRSEELTPLGFHLARMPVEPHIG
KMILFGALLGCLDPVLTIAASLSFKDPFFIPLGKEKIADHRRKVLSQNSRSDHLTIVNAF
WGWEDAKRQGGRFEREYCWENFLSANTLQMLQNMKGQFAEHLLAAGFVNSKDPKDRSSNI
NSENEKLIKAVIVAGLYPKVAKIRHSNSKKRPTQVYTKADGKVCIHPKSVNAEENQFHYT
WLIYHLKMKTTSVRVFIFLMFLSLLTSQILRLIFVFF
NT seq
2814 nt
NT seq
+upstream
nt +downstream
nt
atggatcatgggtacggtaatagacgcggtcggagagaagggggtcggcggttcggagat
ggagaatccaagtgggatggaggggctggatccagtgggggtgcaggatacccgaggagc
tccgattgggactcaagggaagagcaaggacatggaaggggacgaagaggaagaggagga
ggaagaggcaaacatccaccccatttaaagggtcgagaaattggactgtggtatgccaaa
tggggcggcattaaaagatctgaggcagagaggaaatctagggccgttgttcagatggat
gagtcacgagagcagcacattactcagttgctgaattctgttcaaagagatctgggcaga
gatgagcatccctccacgtctcagagctggagggtgaaggaggagcccagtggccacagt
tactttgatggagatgatcctccagaactgccgaacattgtgaaagtgccaaaaattgag
cctaaagaggagaaacgggaggatgagctgggagcaaatgtgaaagaggagcttaatgac
gctgacctggaatacttactccaggatgttgtgcggacagcctccctggatgaggagctc
aagaaagatctggagaagaaaaaagaaaacgctagatacatcgatatgctgaaattcaga
gagaagctaccttcttatgggatgagagaggaactggttaaactgatcagtgctaaccag
gtactggtagtcagtggagagacaggctgtggtaagaccacccaggtcactcagttcatc
cttgatgacttcatccagaggggcgtgggctctctctgcagggtggtttgcacgcagcca
cggcgtatcagtgccatatctgttgcagagagagtggcttcagaaagggcagagccggtg
ggagaagggaagtcctgtgggtatcagatccgtctgcagagtcggttaccacggaaacaa
ggctcggtgttgtattgtacgacgggcattattcttcagtggctccgctcagatacatac
ctctctagcgtaagtcacctgatcttggatgaaattcatgagaggagtcttcagtctgat
gttcttctcaccatagtgaaggacctgttaattgctcgaaaggacctaaaagtagtcctc
atgagtgcgacacttaacgctgagaaattcagcaagtatttcaataattgtcccatgatc
catattcctggatacacatacccagtgaaagagtttttactggaggatgtggtagaattg
cttagattccagccaaagcaacatgaccgaagacctcgctataagagagggtttatgcat
ggacagaatgcacggccagagaaagagcagaaagaggcagaataccatgaaagctggccc
tgttacgcccgtacgctcagagatcggtactcagacagcaccattgacacgcttcagatg
atggatgatgatgagaagatcaatctggagctcatcgtaggattgatccgacacatcgta
atgaaagaggatgatggagcaattctggtgtttctgcctggatgggacgacattagcacc
ctgcatgatttgatcatggctgaccagatgtttaagtcagatcggtttatcatcatcccc
ctccactctttgatgcccacagtctctcaaactcaagtgttcaaaaagccacccctggga
gtgcgcaagattgtgatctctaccaacattgcagaaaccagtattacgatagatgatgtt
gtgtatgtgatcgatggagggaagattaaggaaacacatttcgacacccagaacaatatc
aggaccatgacagcggagtgggtgagcttagccaacgccaaacagaggaagggccgtgct
ggaagagtgtctccagggaaatgttatcacctctataatggactgagggccagcctcctg
gataactaccagttacctgagatccaacgcactccacttgaagagctttgcttgcaaata
aagattctgaagttgggccccattgcgtgtttcctgcggaaaactttggatcccccatca
gacaaagctatagagctggccatcacacacctggtggacctgaacgccctggacaggagt
gaagagctgactccattaggatttcatcttgcccgtatgcctgtagagcctcatatagga
aaaatgattctgtttggagctcttcttggctgtttggatcctgtgcttaccattgcggcc
agccttagctttaaagatcccttcttcataccactgggaaaggagaagatcgcggaccac
aggagaaaagtgctctctcaaaactctagaagtgatcatctcactattgtcaatgcattt
tggggctgggaggatgctaagagacagggtggcaggtttgagagggaatactgctgggaa
aacttcctgtctgcaaacacgttacagatgcttcagaatatgaagggtcagtttgcggag
catcttttggcagctggctttgtgaatagtaaggaccctaaagatcgcagctctaacatc
aactcagagaatgagaagctgattaaggcggtgatagtagcaggactgtacccaaaagtg
gccaagattcgccacagcaatagtaagaagagaccgacgcaggtgtacactaaggctgat
gggaaagtttgtatccaccctaaatctgtcaatgcggaggaaaatcagttccactacaca
tggctcatctatcacctgaagatgaagaccaccagtgtacgtgtctttatttttttaatg
tttttatctttgctgacgagtcaaatattgaggctaatttttgtgttcttttaa
DBGET
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