Pimephales promelas (fathead minnow): 120486033
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Entry
120486033 CDS
T08155
Symbol
rbm39b
Name
(RefSeq) RNA-binding protein 39b isoform X1
KO
K13091
RNA-binding protein 23/39
Organism
pprm
Pimephales promelas (fathead minnow)
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pprm03041
]
120486033 (rbm39b)
Spliceosome [BR:
pprm03041
]
Common components
Common spliceosomal components
General mRNP proteins
120486033 (rbm39b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RBM39linker
RRM_occluded
RRM_5
RRM_7
RRM_8
RSRP
Motif
Other DBs
NCBI-GeneID:
120486033
NCBI-ProteinID:
XP_039537809
LinkDB
All DBs
Position
Unknown
AA seq
542 aa
AA seq
DB search
MADDFDVEAMLEAPYKKGESKSSSANGHNEERSKNRKRRSNSRSPSPGQQRSRSGGRKKS
RERRKSRSRERRRSRSKERKRSRSRSKERGGRFRGRKSPFMGPKLNGGPGGKTGPQHFTK
HSRRSPFKKDRSPFKKDRSPFKKDRSPFKKDKSPVRQPIDNLSPEERDARTVFCMQLAAR
IRPRDLEEFFSAVGKVRDVRMISDRNSRRSKGIAYIEFVEATSVPLAIGLTGQRVLGVPI
IVQASQAEKNRAAAMASMLQRGGAGPMRLYVGSLHFNITEDMLRGIFEPFGKIEGIQLMM
DSETGRSKGYGFISFADAECAKKALEQLNGFELAGRPMKVGHVTERSDASSASSFLDNDE
LERTGIDLGTTGRLQLMARLAEGTGLQIPAAAKHALQMSGSVTFGNLANASSAPPLLPNH
GMNQAMNLPTQPLATHCLQLSNMFSPQMENEPGWDMEIQDDVIEECKKHGGVVHIYVDKN
SAEGNVYVKCPTIPVAMSVVSALHGRWFAGKMITAAYVPLPTYHNLFPDAATATELLRPM
NR
NT seq
1629 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgacttcgatgttgaggccatgctggaagctccttataagaagggtgaaagc
aagtcctcgagcgccaatggtcataatgaggaacgtagcaaaaataggaaaagacgcagc
aacagtcgtagtccgagtccaggccagcagaggagtagaagcggggggcgcaagaagagc
cgagaacgacgcaagagccgcagccgcgagcgaagacgttcacggagcaaagagcgcaaa
cgttcgcgatcccgcagcaaggaacgtggtggccgtttccgtggacgcaaaagccccttt
atggggccgaaattaaatggtggtcccggagggaagaccggcccacaacatttcaccaaa
cacagtcgcaggagcccgtttaagaaggacagaagcccatttaagaaggacagaagcccg
tttaagaaggacagaagcccttttaagaaggacaaaagccctgtcaggcaaccaatagat
aatctgagcccagaggagagagacgcccgtacagtgttctgcatgcagctcgctgccaga
attagacccagagatctggaagaattcttctctgcagtgggaaaagtccgtgacgtaagg
atgatctcggatagaaactctcggaggtcaaagggtattgcctatattgagtttgtggag
gccacatcagtaccgctggcaatcggcctgacgggccagagagttctgggagtgcctatc
atagtccaggcttcgcaggctgagaagaacagggccgcagccatggccagcatgctccag
agaggtggtgcagggcccatgcggctgtacgtgggctccctgcacttcaatattactgag
gatatgctgaggggcatctttgagccattcggaaagattgaaggcatccagctaatgatg
gacagtgagacaggcagatcgaaaggatacggcttcatatcatttgcagatgcagaatgt
gcaaaaaaagccctggagcagctaaatggttttgagcttgcggggcggccaatgaaggtg
ggtcatgttacagagcgttcggatgcgtcctcagccagctctttcttggacaatgatgaa
ctggagagaactggcattgacttgggcacgacgggtcgtcttcagctgatggcaagactc
gcagaaggcacaggactgcagattcctgccgctgccaagcatgccttacagatgagtggc
tctgtgacatttggaaatctggcaaatgcctcatccgcacctcctcttcttcccaatcat
gggatgaaccaagctatgaaccttccaacccagcctctggccacacattgtttacagctc
tccaacatgttcagtccacagatggaaaacgaacctggctgggacatggagatacaggat
gatgtcatcgaagagtgcaaaaaacatggaggagttgttcacatatacgtcgacaagaac
tctgctgaaggaaatgtttatgtaaaatgtccaaccatcccagtcgcaatgtctgttgtc
agcgctctgcacggccggtggtttgctggtaaaatgatcacagctgcctatgtgcccctc
cctacataccataacctgtttccagacgctgccacagccacagagctcctgaggcccatg
aaccggtga
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integrated database retrieval system
