Pimephales promelas (fathead minnow): 120486246
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Entry
120486246 CDS
T08155
Symbol
lsm7
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm7 isoform X1
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm03018
RNA degradation
pprm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120486246 (lsm7)
09123 Folding, sorting and degradation
03018 RNA degradation
120486246 (lsm7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pprm03019
]
120486246 (lsm7)
03041 Spliceosome [BR:
pprm03041
]
120486246 (lsm7)
Messenger RNA biogenesis [BR:
pprm03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120486246 (lsm7)
mRNA degradation factors
5'-3' decay
Lsm complex
120486246 (lsm7)
Spliceosome [BR:
pprm03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
120486246 (lsm7)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
InhA-like_MAM
Motif
Other DBs
NCBI-GeneID:
120486246
NCBI-ProteinID:
XP_039538068
LinkDB
All DBs
Position
Unknown
AA seq
108 aa
AA seq
DB search
MGFINKHDKDKKKKESIFDLSKYIDKHIRVKFQGGREASGVLKGFDPLLNLVLDGTIEYM
RDPDDQYKLTEDTRQLGLVVCRGTSVVLICPQDGMEAIPNPFVQQQDG
NT seq
327 nt
NT seq
+upstream
nt +downstream
nt
atgggttttataaacaaacatgataaagataagaaaaagaaggagagtatttttgatttg
tcgaaatacatcgacaaacatataagagtaaagttccaaggaggtcgtgaagcaagtggt
gtcttaaaaggattcgacccgctgttgaatcttgtgttggatggcactattgaatacatg
cgagatccggatgatcagtacaagctgaccgaagacaccaggcagctcggtctggtggtt
tgtcgagggacgtccgtcgtgcttatctgtccacaggacgggatggaggccattccaaac
cctttcgttcaacagcaggatggataa
DBGET
integrated database retrieval system
