Pimephales promelas (fathead minnow): 120486801
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Entry
120486801 CDS
T08155
Symbol
frem1b
Name
(RefSeq) FRAS1-related extracellular matrix protein 1b isoform X1
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120486801 (frem1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
pprm04091
]
120486801 (frem1b)
Lectins [BR:
pprm04091
]
C-Type lectins
Lecticans
120486801 (frem1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Big_9
Calx-beta
Lectin_C
Motif
Other DBs
NCBI-GeneID:
120486801
NCBI-ProteinID:
XP_039538889
LinkDB
All DBs
Position
Unknown
AA seq
2148 aa
AA seq
DB search
MGVFKLYSTLLTLSHLWSHVQASSLVRLNAGLRVARGQSVFVTAGELQFHTNGISEACKV
EVVLTEPVTQRVGKLTPQVFDCQFLPDEVKYVHNGSPLLEEDAVMLRVYRFTETQTFVET
VLLQIHVLEPQRSLTELGNVPLVVPEFYGLSNAINGSVLSFKTQPDVICTVRLLSSEINV
PVLGQLVVEDPETMIATEAGPRKGRHTGIACPGNKACDHNTREVEFLKTDCTEFLTSGLK
YQHHSPPSPEIDYIPVRVEFRDQTSRAVLETESIWIPVLIQGAMENQPPHAAFMSTFILE
VDQFILTPMTTAALDAKDDETSQAQLIFNVTKPPAEGYITHLDDHTKTVSSFSWQDLNEM
KIAYQPPNSSHTARRNYEVEFQAIDGSFVPSLPILMHISIRTAETNSPRVSWNMGLDLLE
GQSRPITWEHLQVVDNDNIDAVTLIAMDGPLNGHLSVRGGKGFMFKVKDLREGVVVYHHS
DSDTTRDYVVFRITDGRHSIRHKFPIYILPKDDTPPFLINNVAFEVQEGGTVRVEEYMLM
ASDLDSSDDYIQYQLITFPRGGQLVKKSSPREPGVPVKSFLQRDLFQGLIYYKHSGEEVF
EDSFDFILLDVHQPPNLSDRHTVVIHVFPVKDQLPEEVSGTVRSITVKETEVVYITQSHL
HFRDTEHSDTDLTYVITHPCFRPENTRLSDAGRLFYTDTTNSMKKDAMVPVLKSFTQHAV
NHHKVAYMPPIEDIGPEPLFVQFVFSVSDQQGGALTGLIFNITVTPVDNQAPEMFTNLLR
VEEGGGSFLMEEHLLVQDVDSSEDQLRIHVKTQPQHGRLELQGTPLLEGDSFRLLDLKAL
RVRYIHDDSETLQDSIGLTITDGINSAHGKLLVQIMPVNDEPPQLDSNLRAELSCKEGGQ
VQITVEYLSATDVDSEDNRLTYMLARTPTIGALQRNGVTVDKFSQLDVLNGLIFYLHTGG
EIGPDPVSDTVTLIVSDGEAGTMDGCCQEDAAPPPVPLHGTLPVYDLNITVMPVNNQVPT
ITLGNMFVVDEGASACLCGGVLEATDPDSHPNQLMFHLVTPPQYGFLENTLPSPGFEKSN
AGLRVVSFSQLHLSLGFINYVQSVHQGVEPTADFFTISVSDGIQRSAPLPFYVIINPTND
ETPSLLLGNFTVMEGGMKDLSPDILNAVDIDIPAETLTMSILVPPAHGTLLNGIYGVEMN
RYKNMNPEVLQRTLAIQSFTLQELQQGMKIMYMHDDTETLKDAFTIQLTDGGHTVQGTAC
VRIIPVNDEKPWLLKNAGVEVEALEKRVISSVALEAEDQDTPNNHILYILNAGPRFGILQ
LMTEAGWIDLSPGQNFTQEDVEMNRLWYTHTTVNGFKGHDRFHFVLSDGENGTPPQSFFI
SVRTVQRGEIALITKPVTLMEGERVILTTDVLMATDSGSKPEELMYTVSVPPEHGHLHMV
QSPGVLVFSFSQMDVAANRVCYTHDNSRFADRDSFSFVVTNSVTSRSGTILFTVEHSDRI
PPTLSINKGLELSENSMKTISTNDLKLTDPDTALGNLTYIIIQSPQYGKLLLKGLPLSKP
HFTQLDINNMDLAYHHLNGRAKIDRFTFQPSDGTNAGYLEYGRLKSEPAVFNIQIDILDK
TPPTIVNKGIPSTVENLPDGKQGIYITFKELKASDPDSPDDTLEFTITRPPHFGYLENTL
TGAYIKGRFTQKDLDQKAVRYVIPADMEVTADSFEFQVTDPAGNTMLPEVIELRWSRVEL
SASCYRVCENAGTLAVQVLRSGNSRDPAYIAIQVEEGTAKVGKDFTHSSASLVQFDPGVH
VKMWNIYLKDDGLEENHEKFDVVLKTPKNAVLGQRNKATVEIVDTRNGKCNPDDLVVEED
EKQHPFQGPPYVQEPEPPLLEEYTPDPRSGIFWGNYPPRGDVPDRTHFSHFSVGEPQDHF
HSQGQRQLRILGRSRHRVSQAHLSEVDNRNQERVWRFHGLIPVRIEEKAAAPRVHSDLEI
TPIWTWPGYAADSESVETPQRDSASLVTDSGVRQHKAQKPVSIGCPKGWTHYRRNCYILG
PDIASWSSAQHVCMLLESQLSSIHSKTDMKWIWKFAGRQSFWIGLMGGPKQWSWTDGKPL
KFSKIKKDHDIHTSSACVLAQNQKIWISKSCTDGSEHRYVCSAPAEIS
NT seq
6447 nt
NT seq
+upstream
nt +downstream
nt
atgggggtgttcaaattatactcgacattgctcaccttgagtcatctgtggtcacatgtc
caagcttcgagtctggttcgtttaaacgcaggtcttcgggtagccagaggccagtctgtg
tttgtcacggctggtgaacttcagttccacacaaatgggatatctgaggcctgtaaggta
gaagtggtgcttaccgagcctgtgacgcaaagagtggggaagctgactcctcaggttttt
gactgccagttcttacctgacgaggtgaagtacgtccacaatggcagtcctcttcttgag
gaggacgctgtcatgctgagagtctacaggtttacagaaacccagacttttgttgagact
gtgctactacagatacatgtgctggaacctcagaggagcctcacagagcttggaaatgtt
cctttggtggttcccgagttctacggcctttccaatgccatcaatggcagtgtcctttcc
tttaaaacccagcctgacgtgatctgcaccgtacgtcttctcagctctgagatcaacgtc
ccagtgcttggtcaactggtcgttgaagatcctgaaacaatgatagccactgaggctgga
ccaagaaaaggacgtcacactggaattgcatgccctggaaataaagcctgtgaccacaac
acaagggaagttgagttcttgaagacggactgcaccgagttcctcacttcaggtctgaag
taccagcaccacagtcctccatcacctgagattgattacatcccagtcagggtggagttt
agggaccagacatcccgagccgtgttggagaccgagagtatctggataccggtgttgatt
cagggggccatggagaaccaacccccccatgccgccttcatgtctacgttcatcctggag
gtggatcagttcatcctcacccccatgaccactgctgccttggatgccaaagatgacgag
acctcgcaggcccagctcatcttcaacgtgaccaaacctccagcagaggggtatataact
catttggacgatcacactaaaacggtatcctccttttcgtggcaagacctgaatgagatg
aaaatcgcttatcagcccccaaacagcagtcacacagccaggaggaactatgaggttgag
tttcaggccatcgatggctcatttgtgccgagtcttcctatcctgatgcacatctctatc
cgcactgcagagaccaactcccctcgagtctcgtggaatatgggcttggatttgttggaa
ggccaatccagaccaatcacatgggagcacctacaagttgttgacaacgacaacatagat
gccgtcaccctgatcgctatggatggccctcttaatggacacttaagtgttagaggtgga
aaaggcttcatgtttaaggtcaaggatctcagagaaggcgttgtggtctatcatcactcg
gacagcgacaccacaagggattacgtcgtcttccgaatcacagatggccgccatagcatc
agacacaaattccccatctatattcttccaaaagacgacaccccgccttttttaatcaat
aatgtggcctttgaggtccaagaaggtggcacggttagggtggaggagtacatgctgatg
gcctcagacttggactccagcgatgactacattcagtatcagctgattacttttcctaga
gggggacagctggtaaagaagtcctctccacgtgaaccaggtgtcccagtgaagagcttc
ctgcaaagggacctttttcaaggtctaatctactacaagcactcaggggaggaagtgttt
gaggactcgtttgatttcatcctgttagatgtccatcagcctccgaatctatcggacaga
catactgtggtgatccacgtgtttccagtgaaggaccagttgcctgaggaagtttccgga
acggttcgctccatcacggtgaaggaaactgaagtagtttacattactcagagccatctg
cacttcagagatacagagcattcggatactgaccttacgtatgttatcactcatccctgc
tttagaccggaaaacaccaggttatcagatgcaggcaggctgttttatactgacaccaca
aactccatgaaaaaagatgcaatggttccagtgcttaagtcctttacccagcatgcagtg
aaccaccataaagtggcttacatgcctccaattgaggatattggccctgagcctcttttc
gtgcagtttgtgttttctgtgagtgaccagcagggcggcgctctcaccggactcatcttc
aatatcacagtcacacctgttgacaaccaggccccagaaatgttcactaacttgctgagg
gttgaggaaggtggcggtagtttcttaatggaggagcacctgttggtgcaggatgtggac
agttcagaagatcagctcaggatacatgtgaagactcaacctcaacatggaagactggag
ctgcagggcacgccactgctagaaggagacagtttcagactgctggacctcaaagcattg
agggtcagatacattcatgatgactctgagaccctgcaggatagcattggtcttactatt
acagatggaatcaactctgcacatggaaagcttttagttcagatcatgcctgttaacgat
gagcccccacagttagactccaacttgagggctgaactgtcctgcaaagaggggggtcag
gtccaaattacggttgagtacctctctgctacagatgttgacagcgaggacaatcggcta
acatacatgcttgccagaacacctacaattggggcactacagcgaaatggggtcaccgtg
gacaagttctcccagctggatgtgctcaatgggctcattttctacctgcacacagggggt
gagattggacctgatcctgtctcggacactgtcactctcattgtgtcagatggagaggct
ggaacaatggatggctgctgccaggaggatgctgctcccccgcctgtccccctgcatggc
actcttcctgtctatgacctcaacatcactgtgatgcctgtcaacaaccaggtcccaacc
ataacgctgggtaacatgtttgtggtggatgagggtgccagtgcatgtctgtgtgggggt
gtgttggaggccactgatcctgatagtcatccaaaccagctcatgtttcacttggtgaca
cctccacaatatgggttcctggagaatacccttccatcccctggatttgagaaaagcaac
gccggactccgagtggtttctttcagccagctccacctcagtttgggtttcatcaactat
gtccagtcagtgcaccagggtgtggagcctacagcagacttctttaccatcagtgtcagt
gatgggattcagagatcagcaccattgcccttctacgtcatcatcaaccctaccaatgat
gagaccccatcactgctacttggcaactttacagtcatggagggagggatgaaagacctc
agtcctgatattctaaatgcagtggacattgatattccagcagaaactcttactatgtcc
atcctggttcccccagcccatggcacactgctcaatggcatatatggtgttgagatgaat
cgttacaaaaacatgaacccagaggtcctccaacgaaccctagcaatccagtctttcacc
ttacaggaactacaacaaggaatgaagatcatgtatatgcatgacgacacagaaaccctc
aaggacgctttcaccatacagttgacagatggtgggcacacagtccaggggactgcgtgt
gtccgcatcataccagtcaatgatgaaaagccatggctactaaaaaatgcaggtgttgag
gttgaggccctggagaagagagtcatctccagtgtagcgctggaggcagaggatcaagac
actcccaacaatcatattctctacatcctcaatgcaggtcccagatttggcatccttcaa
ctcatgacagaagctggatggattgatctgagtccaggtcagaatttcacccaggaggat
gtggagatgaatcgcctatggtacactcacactacagttaacggtttcaaaggccatgac
aggtttcactttgttctcagtgatggggaaaacggaacacccccacagagtttcttcatc
tctgtccgcactgttcaaaggggtgagattgctctaatcactaaacctgtgaccttgatg
gagggagagagagtcattctgaccactgacgttctgatggccacagacagtggaagcaag
ccagaagagctcatgtacaccgtttcagttccacctgaacacggtcacctgcacatggtc
caaagtccaggggttctagtgttctccttctcccagatggatgtggcggccaaccgggta
tgctacactcacgacaacagccgttttgctgaccgtgattctttcagctttgtagtcacc
aacagtgtgacgtccagaagcggtactattcttttcaccgtggaacacagtgaccgtatc
ccaccaaccctgagtatcaacaaaggccttgaactctcagagaactctatgaagactatt
tccactaatgacctgaaactgactgatccagacacagctctagggaatctcacctacatc
attattcaaagcccacaatatggcaagttgctcttgaaaggtttacccctctctaagcct
catttcacgcaactggacatcaacaacatggatctagcttaccatcatctaaatggacga
gccaagatcgacaggttcacctttcagcctagtgatggaaccaatgccggttatttggag
tatggacggctgaagagtgaacctgctgtttttaacatacagatagatatattggacaag
acaccacccactattgtaaacaaagggattccaagtaccgtggagaatcttccagatggc
aaacagggcatctacatcaccttcaaagagctgaaagcctcagatccagacagtcccgat
gacacactcgagttcacaatcacaaggcctccacacttcggttaccttgaaaacaccctc
acaggtgcctatatcaaaggacgcttcacccagaaggatctggaccagaaggcagtgcgc
tatgtcattcctgctgatatggaagtgaccgcagacagctttgagttccaagtcacagac
cctgcaggaaacaccatgcttcctgaagtgattgaactgaggtggtctcgtgtggagctg
tctgcttcctgttatcgtgtttgtgagaatgcgggaactctagctgtgcaggtgttgcgc
agtgggaacagcagagatccggcgtacatcgctatacaggtggaagagggaacagctaaa
gtcgggaaagacttcactcacagttctgccagtcttgtgcagtttgatccaggtgtacat
gtcaaaatgtggaacatttacctcaaagatgatggactagaagagaaccatgagaaattt
gatgtggttttgaagactccaaaaaatgctgttttgggacagaggaacaaggccacagtt
gagattgtggatactagaaatggcaagtgtaatccagatgaccttgttgttgaagaagat
gagaagcaacatcctttccaaggcccaccctacgtccaagagcctgaaccacccctactg
gaggaatacactccagacccaaggagcggaatcttttgggggaactatccgccaagaggg
gacgtcccagatcgcactcacttcagccatttcagcgtgggagaacctcaggaccacttt
cacagtcaaggccaaaggcagctgaggatcctgggtagaagcagacacagagtgagccag
gcacatctgtcagaggtggacaacagaaatcaagaaagagtttggagattccatggactg
atcccagtgagaatagaggaaaaggcggcagctcctcgtgtccactctgacctggagatc
actcccatctggacctggccgggatatgccgctgattctgaatcagtggaaactccccag
cgggactcagcctctttggtcactgattcaggagtgcgacaacacaaggcacagaagcct
gttagtataggttgtcctaaaggctggactcactacaggaggaactgttatattttgggg
cctgatattgctagctggagcagcgcacaacatgtttgcatgctgcttgaaagtcaattg
tcaagtatccactcaaagactgatatgaagtggatatggaagtttgctggaaggcaatcg
ttctggatcgggctcatggggggtccaaagcagtggtcctggacggatggaaaaccactg
aagttctccaaaatcaagaaggatcatgatatccacacgagctctgcctgtgttttagct
cagaaccagaagatatggatttctaaaagttgcactgatggatccgaacacagatacgtt
tgttcagcacctgcagaaatcagttaa
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integrated database retrieval system
