Pimephales promelas (fathead minnow): 120487156
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Entry
120487156 CDS
T08155
Symbol
ifih1
Name
(RefSeq) interferon-induced helicase C domain-containing protein 1
KO
K12647
interferon-induced helicase C domain-containing protein 1 [EC:
5.6.2.6
]
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm04622
RIG-I-like receptor signaling pathway
pprm05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
120487156 (ifih1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
120487156 (ifih1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
pprm04054
]
120487156 (ifih1)
Enzymes [BR:
pprm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120487156 (ifih1)
Pattern recognition receptors [BR:
pprm04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
120487156 (ifih1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CARD_2
RIG-I_C-RD
RIG-I_C
ResIII
DEAD
Helicase_C
SWI2_SNF2
SNF2-rel_dom
CARD
DUF3638
AAA_22
AAA_19
Motif
Other DBs
NCBI-GeneID:
120487156
NCBI-ProteinID:
XP_039539309
LinkDB
All DBs
Position
Unknown
AA seq
991 aa
AA seq
DB search
MSIDQDAETRHILDCFRDRLKQIIQVEPLLDQLHFLGQDRKDKIRAKLRADGDISAAALL
IDEILQTQHDKGWPRELVTALETAGCTHAVNYVRNSPPEPTEEAENDSCVRLIDLMQLTL
VNMKTTDVCAQCWSLGLLTPEDKENIMKATENHGNINGARVLLKRLVKNEAGWFSKFLQA
LEETEHRELVRELRGEPCNEDESMSVEIRTVEEGEQTCLALAKETDPVLNGSMPVVSANS
SLLSEDLDSSVDGSVLGASAENEDVDMYNGQEEEEGDPTEDDDPSARTIELRDYQMEVAR
PALEEKNIIICLPTGSGKTRVAVYITKEHLERKKQMGQPGKVVVLVNKVPLVEQHYKAEF
GRFLKHQYSVERVSGASQLKISFPQIIEQNDIIICTAQILENSLAKAKTGDEDGIKLSQF
TLMVIDECHHTKKGYAYNHIMIRYLKQKHKNQLLKKQGKSPAAIPQILGLTASPGVGGAM
NQQMAEQHILQICANLDAFTIKTKTLGEEEAKTPYKRIARAEERKTDPFGDVIKKIMDEI
HTHADLLPSCEPGTQNYEQWVVQKEQNAAKEENQKVRVCAEHLRHYNEALNQSHIIRMSD
AFRYLDKYHNEELKTKSSPDDEGTVTITDTERFLFTLFKDKKAKLEELMGKPEYENNNLA
KLKSIILKEFSTREVARGIIFTKTRLSAQALCQWIQENPKFDEVGVSASYLIGGGDQSVV
KPMTAAEQKDVLQKFRKGEINLLIATTVAEEGLDIAECNVVIRYCLVTNEVAMIQARGRG
RAEDSSYTLVAEAGSGVEERESVNEYREKMMSKAIAKICKMNRADYEKKIREFQIQAIME
EKVKIKKKQQKGMMKDPPSKISLSCRDCSVFVCSGEHLEMIENMHHVNVTEQFRKLFIVR
ENASLQERLLDYETNGVIACKNCGQQWGSMMLYKSIECPCLHIKNFVVTYDSKKKIYNKW
GDLPIRFPAFDYTQHADMLVEDSEEEDTDGD
NT seq
2976 nt
NT seq
+upstream
nt +downstream
nt
atgagcattgatcaggacgccgagacgcgtcatattctggactgtttcagagacagactg
aagcagatcatccaggtcgagccgcttctggatcagctgcacttcctcggacaggatcga
aaggacaaaataagggccaagttacgggcggacggggacataagcgccgcagcactcctg
atcgacgaaatcctccaaacacaacacgacaagggatggccgagagagctggtcaccgcg
ctggagaccgctggatgcacacacgcggtgaactacgtgcggaacagcccgccggagccg
acagaagaggccgagaacgacagctgtgtccgcctgatcgatctcatgcagctgaccctg
gtcaacatgaagaccacagacgtgtgcgcgcaatgctggtcactggggctcctgacgccc
gaggacaaggagaacattatgaaagccactgagaatcatgggaacataaacggcgctcga
gtgctcctcaaaaggctggtgaaaaatgaagcgggctggttctccaagttccttcaggct
ctggaggagacggagcaccgggagctggtgcgcgagctgcggggagagccgtgcaacgag
gacgagtccatgtcagtcgagatcagaactgttgaggagggcgaacagacgtgtttggct
ctcgcgaaagagacggacccggtcctgaacggctccatgcccgttgtctctgcgaatagc
tctcttttgtcggaggacctggacagcagtgtggacggcagcgttctgggggcgtctgcc
gaaaatgaagatgtagacatgtacaatggccaggaggaagaggaaggggatcccacagag
gatgatgatccgtcagcgaggacaattgaactgcgagactatcagatggaggtggcgaga
ccagctctggaggaaaagaacatcatcatctgcctcccaacaggaagtggtaaaaccagg
gtcgctgtgtatatcactaaagaacatttggagaggaagaagcagatgggacaaccgggg
aaagtcgtcgttctggtcaacaaggttcctctggtcgagcagcactacaaggccgagttc
gggcggtttctgaagcaccaatactcagtcgagcgagtcagcggagcctcgcagctcaaa
atctccttcccacaaatcattgagcaaaatgatatcatcatctgcacagcacagatcctg
gaaaactctttagccaaagccaagaccggtgacgaggacgggatcaaattatcacagttc
accctgatggttattgatgaatgccaccacacgaagaagggttatgcgtacaaccacatc
atgattcgctacctgaagcagaaacacaagaaccagctcctgaagaagcagggcaagagt
ccggcggcgatccctcagattctgggtctgacggcgtcacctggtgtgggcggagccatg
aaccagcagatggcagagcaacacatcctccagatctgtgcaaacttggacgccttcaca
ataaaaacaaagactttgggagaagaggaggccaaaacgccgtacaaaaggattgcaaga
gcagaagagcggaagacggacccgtttggagacgtgatcaagaagataatggatgaaatc
cacacacacgcagatcttctgccctcctgtgagcccgggacacagaactacgagcagtgg
gtggtgcagaaagagcagaatgctgctaaggaagagaatcagaaggtgcgagtgtgtgct
gaacatctccggcattacaacgaggctcttaatcagagccacatcatacgcatgtccgac
gccttccgctacctcgacaaatatcacaacgaagagctgaagactaaatccagccctgat
gacgaaggcactgttacaatcacggacacagaacggttcctcttcactttgttcaaagat
aaaaaagcgaagctggaggagttgatgggaaagccggagtatgaaaataacaatctggct
aagctgaaatccatcatcctgaaggaattcagcaccagagaggtggcgagaggcatcata
ttcaccaagacccgcctcagtgcacaagctctgtgccagtggattcaagaaaaccccaag
tttgatgaagtgggagtcagtgccagctatctgatcggtggtggagatcagagtgtggtg
aagccgatgaccgctgcagagcagaaggatgtgttgcaaaagtttcgtaaaggcgagatc
aatctgctgatagccaccactgtggctgaagagggcctggacatcgccgagtgtaacgtc
gtcatacgctattgccttgtgaccaatgaggtcgccatgattcaggcccgcggtcgagga
agagcggaggacagcagttacacactcgtggcggaggcagggtctggggtagaagagaga
gagagcgttaacgaatacagggagaaaatgatgagcaaagccatcgccaaaatctgcaag
atgaatcgagccgactacgagaagaaaatcagagagtttcagatccaggccataatggag
gagaaggtcaagataaagaagaaacagcagaagggaatgatgaaggatccgccatctaaa
atcagcctgagctgcagggactgcagtgtgttcgtgtgctcgggggaacacctggagatg
atcgagaacatgcaccatgtcaatgtcactgagcagtttagaaagctgtttatagtccga
gagaacgcatcactgcaggagcggctcttggactacgagaccaacggagtcattgcgtgc
aaaaactgcggacagcaatggggctcgatgatgctgtataaaagtattgagtgtccctgc
ctccatatcaagaactttgtggtcacgtacgactccaagaagaagatctacaacaaatgg
ggcgacctgcccataagattccctgcgtttgactacacacaacacgccgatatgcttgtc
gaggactcagaggaagaagacacggacggcgactga
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