Pimephales promelas (fathead minnow): 120487284
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Entry
120487284 CDS
T08155
Symbol
col4a2
Name
(RefSeq) collagen alpha-2(IV) chain
KO
K06237
collagen type IV alpha
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm04382
Cornified envelope formation
pprm04510
Focal adhesion
pprm04512
ECM-receptor interaction
pprm04518
Integrin signaling
pprm04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120487284 (col4a2)
04518 Integrin signaling
120487284 (col4a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
120487284 (col4a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
120487284 (col4a2)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
120487284 (col4a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pprm04147
]
120487284 (col4a2)
00536 Glycosaminoglycan binding proteins [BR:
pprm00536
]
120487284 (col4a2)
Exosome [BR:
pprm04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
120487284 (col4a2)
Glycosaminoglycan binding proteins [BR:
pprm00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
120487284 (col4a2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
120487284
NCBI-ProteinID:
XP_039539519
LinkDB
All DBs
Position
Unknown
AA seq
1668 aa
AA seq
DB search
MEGENHLQHWNKLRCFLLCLAVLVLSTEVNAGVKKSSGPCGGRDCSGGCQCYPEKGARGL
PGALGPQGPTGPNGRQGDTGLQGSKGEKGDHGKGGIMGPKGSVGMVGVPGFDGADGVPGH
PGPSGPRGKPGADGCNGTRGDSGTPGLPGFDGGRGITGQPGNKGEKGDPLELWVYMERFK
GDPGPPGPPGFVGPTGNPGYSGLQGYQGPWGPSGSKGAKGQKGESSKLLKGFKGEPGDIG
VPGPQGPYSLSGPNITEFQGEKGQKGYNGEPGEVGYAATKGETGVSGFPGQRGNPGLNGW
PGPRGDTGLPGFPGNSGRKGDIGEPGELIGGSKENNGVGPPGSPGERGLIGKYGSKGVKG
QPGPPGPPPPEQQTVDLWGPQGPQGPKGGKGEAGEPGNPATQPGPPGSEGLPGFRGPPGP
KGSLEDFFRGPPGQRGRPGNAGKKGPKGDHGPCECSVTSQPGLMGPPGDAGDPGMDGEWG
QPGDQGDAGPKGVDGVFGFPGVRGLSGPKGRKGEMRAATQKGLPGDPGDPGASGFQGEQG
RPGPSGQDGEPGLKGSPGDGPVGEPGEKGYQGRPGLPGPKGLTGQPGQVLGATKGVRGLP
GDDGQIGFEGVKGLPGAPGDCSSREDQWNIEVECFGNPGPPGKPGHPGLPGLAGFSGVPG
AKGMPGLSGGPGAKGELGEPGRGGPPGPRGFVGIRGDLGFPGSKGVDGAPGIFGKPGLDG
ASGKKGEHGEVLGASTGAPGEPGLPGQRGETGLPGDPGQKGYPGMEGMPGMIGLKGEDGP
PGLQGEIGKPGPRGTFGFPGQPGYKGPPGPSGKNGEPGPSGIRGDQGDPGLHGVGGVKGV
IGDPGNVGVPGNIGVPGDPGQPGPFGFNGLPGLKGNKGGQGISGFPGNIGEKGLKGPPGK
KGQIGFQGQQGAKGFTGLPGEKGDRGVVGPPGEKPIMKIPQMLDNMKGIKGDHGKMGDPG
IIGPEGTKGGPGYPGGDGKDGHPGEPSDAKGVKGVPGEEGQSGPKGMPGPTGQSGIQGFP
GMPGPGGDKGSPGAYGRPGDSGIKGIKGDLGPTMSIPGSTGLRGETGLPGNSGEKGVTGE
PGDRGGPGFDGIEGMKGQPGEPGQSGLPGSDGQPGFPGNQGLKGWPGVPGQKGTPGFQGQ
PGQKGFPGLKGIFGLDGLKGQKGIEGVPGTDNWGPPGDAGAKGERGEIGIPSTEAGIPGN
LGLRGSTGDLGDKGESGRPGVTGPPGEQGFSDIKGVAGDYGLPGTKGLPGFPGPRGITGE
PSPFGAKGDKGNAGDFGFAGEKGVLGDSGEKGPRGEPGVSGRKGDKGEQGMMGFPGRRGF
EGDRGPVGPKGDTGPPGFPGLPGARGLPPIPKKLPGEIGAPGPMGIQGPNGRSGDPGPAG
PPGDPGFLGPKGHKGMPGLPGIPGNPGFRGDTGQMGHPGLQGEEGSRGRSGLPGATGMAG
RSVNVGYLLVKHSQSEQIPMCPVGMAKLWDGYSLLYFEGQEKAHNQDLGLAGSCLPRFNT
MPFLYCNPGDVCYYASRNDKSYWLSTTAPIPMMPVEEAEIKPYISRCSVCEAPTVAIAIH
SQDITIPQCPAGWRSLWIGYSFLMHTAAGDEGGGQSLVSPGSCLEDFRTTPFIECNGAKG
TCHYFANKQSFWLTSIDQSFQSSPVSETLKAGQLLSRISRCQVCMKNL
NT seq
5007 nt
NT seq
+upstream
nt +downstream
nt
atggagggtgagaaccatctacagcattggaacaaattaaggtgttttctgttgtgcctt
gcagtccttgtcctttcaacagaggtcaatgcaggagtgaagaagagcagtggaccatgt
ggcgggagagactgcagcggagggtgccagtgttatcctgaaaagggtgcgaggggattg
cctggagcccttggtccccagggccccacaggccctaatggacgacaaggtgacacgggt
ctccagggctctaaaggagagaaaggagaccatggcaaaggaggcattatgggcccaaaa
ggaagtgtgggaatggtgggggttccagggtttgatggagcagatggtgttccgggccac
cctggtccgtctgggcctcgtggaaaaccaggagctgatggttgtaacggaacccgggga
gattcaggaactccgggtcttccaggatttgatggtggacgtggaataacaggtcagcca
ggaaacaagggggagaagggagaccctttggagctgtgggtctatatggaaagattcaag
ggagatccagggccaccaggtcctccaggatttgttggaccaactggtaacccagggtac
agtggactgcaaggttatcaaggaccttggggtccctctggtagtaaaggtgctaaagga
caaaagggtgaaagcagtaaactattaaaaggattcaaaggagaaccgggggacattgga
gtgccaggcccacaaggaccttactcgctgtcaggcccaaacattacagaattccagggt
gaaaaggggcagaagggttataatggtgaaccaggggaggtgggatatgcagctacaaaa
ggagagactggtgtgtcagggtttccgggacaacggggaaacccaggattaaatggctgg
cctggaccaaggggtgacactggactaccaggtttcccaggaaattctggccgcaaggga
gacataggagaacccggagagctgataggaggttcaaaagaaaataatggagtgggtcct
ccaggatctccaggggagcgtggcctaattggaaagtatggttctaagggtgttaaagga
cagccaggtcccccaggaccccctccccctgaacaacaaacagtggatctgtggggtcca
cagggaccacagggaccaaagggaggcaaaggtgaagctggagaacctggtaatcctgcc
actcagcctgggccgcctggttccgaagggctgcctggatttcggggaccacctggaccc
aaggggtcattggaagacttcttcagaggcccacccggacaacgtggacgtccagggaat
gcaggaaaaaaaggaccaaagggtgaccatggtccgtgtgaatgcagtgtaacatcccag
cctggccttatgggccctcctggtgatgctggggaccctggaatggacggggagtggggt
cagccgggtgatcaaggagatgcaggacccaaaggtgtcgatggtgtatttggttttcct
ggtgttagaggattatctggacccaaaggcagaaaaggagagatgagagcagctacacag
aaaggattacctggtgacccaggggacccaggtgctagtggtttccaaggagagcaggga
aggcctggacctagtggacaagatggtgaaccaggtcttaaaggatctcctggagatggt
cctgttggtgagcctggagagaagggatatcaaggtcgaccaggtcttccgggtccaaaa
ggcctaacaggacaacctggccaagttcttggagctactaaaggtgtaaggggccttcct
ggagatgatggacaaattggttttgaaggagtaaaaggtttgcctggtgctccaggagac
tgtagctcaagagaagatcaatggaatatcgaagtggagtgttttggaaatcccgggcca
cctggaaagccggggcaccctggactcccagggttggcaggattttctggagtaccaggt
gcaaaaggcatgccaggtctttctggaggacccggggccaaaggagagctaggtgaacca
ggcagaggaggcccacctgggccaaggggttttgtgggaattcggggcgatttaggattt
cctggctccaaaggtgtggacggagctccaggcatctttggtaaaccaggtttggatggt
gcttcagggaaaaagggtgaacatggagaagttttaggagcatctactggagctcctgga
gaaccaggactgccaggacagaggggtgaaactggccttccaggagacccgggccaaaaa
ggatacccaggtatggaggggatgccaggtatgatcggcctcaagggtgaagatggtcct
ccgggtcttcaaggagagataggaaaacctggaccacgagggacatttggctttcctggg
cagcccggttacaaaggacctcccggaccatctggaaaaaatggagaaccaggtccaagt
ggaataaggggagaccagggagacccaggccttcatggagtgggtggagtaaagggtgtc
attggagaccctggaaatgttggggtaccaggaaatattggggtcccaggagatccagga
caaccagggccctttggatttaatggtcttccagggttaaaaggtaacaaaggtggtcaa
ggcatatcaggttttcctggaaacataggtgagaaaggtttgaaaggacccccaggaaag
aaaggacagataggctttcaaggacaacaaggtgcaaaaggatttactgggcttccagga
gaaaaaggtgacagaggggtggtgggacctccaggtgaaaagccaatcatgaaaatacca
caaatgttagacaacatgaagggaattaaaggtgaccatggaaaaatgggagaccctggc
atcataggtcctgaaggtacaaaaggtgggccaggttatccaggaggcgatgggaaagat
ggacatccaggtgagcccagtgatgcaaaaggtgttaaaggtgttcccggagaagaaggt
caatcagggcctaagggaatgccagggcctacaggacagtctggaattcaaggtttcccg
ggaatgcctggacctgggggtgacaaaggctcgcctggtgcctatggacggcccggagat
tctggaattaagggaataaaaggtgacttgggtcctaccatgagtattccaggatcaaca
ggactgagaggcgaaactgggctgcctggaaattcaggtgagaagggagtcacaggtgaa
cctggagatagaggaggtcctggttttgacggcattgaagggatgaaaggccagccgggt
gaaccaggacaatctggactaccaggctctgatggccaaccgggtttcccaggaaatcaa
ggtcttaagggctggccaggagtgcctgggcagaaaggaacccctggattccaaggccaa
ccgggacaaaaggggtttcctggtctaaaaggcatttttggattagatggcctgaaaggt
caaaagggtatcgagggtgttccaggcactgacaactggggtcctccaggtgatgcagga
gcgaaaggagaaagaggagagatcgggatccccagcactgaggctggcatccctggaaat
ctgggcctcaggggttccactggagatctaggtgataagggtgaatctgggcgtccaggt
gtcacaggtcctccaggcgaacaaggattctctgatataaaaggagttgcaggcgactat
ggccttccaggcactaaaggacttccaggttttcctggtcctagagggattacaggtgaa
ccatctccattcggagcaaaaggagataagggaaatgcaggggatttcggattcgccgga
gaaaaaggagtcctgggggacagtggagagaaaggaccacgtggggagcctggagtgtca
ggaagaaaaggtgataaaggagaacaaggaatgatgggctttccaggaagacgtggtttt
gaaggtgacaggggccctgttggacctaaaggagatactggacccccaggttttcctggg
ttgcctggtgctagaggacttccaccaattccaaagaaacttccaggggagataggagca
cctggcccaatgggtattcaaggacctaatggacgcagtggagatccaggccctgctgga
cctcctggtgatccagggtttttgggtccaaaggggcacaagggcatgccaggtctccct
ggaataccaggaaatccaggcttccgtggagacactggacaaatgggccaccctggtctg
caaggagaagaagggtcccgaggacgctctggtttacctggtgctactggaatggctggc
cgcagtgtcaatgttggctacctgctggtgaagcacagtcagtcggaacagatccccatg
tgccctgtgggcatggccaagttatgggatggttatagccttctgtactttgagggacag
gagaaggcccacaaccaagacctcggtctagccggctcgtgtctcccccgttttaacacc
atgcccttcctgtactgcaatccgggagacgtatgctactatgccagccgcaatgacaaa
tcctattggctgtccaccaccgcaccaattcccatgatgcctgtggaggaggccgagata
aaaccatacatcagccgctgttccgtgtgtgaagctccaactgtggccatcgccatacac
agccaagatataactatcccacaatgcccagcaggctggagaagtctctggattggctat
tccttccttatgcacacggcagccggagatgaaggtggcggtcagtctctggtgtccccg
ggctcttgtctcgaagatttccgcaccactcccttcatcgagtgtaacggggccaaaggt
acatgtcactacttcgccaacaagcagagtttttggttgacctctatcgatcagtccttc
cagagttcccctgtttccgagacacttaaagccggtcagctcctgtcacgcatcagccgc
tgccaagtgtgtatgaagaacctgtga
DBGET
integrated database retrieval system
