Pimephales promelas (fathead minnow): 120487286
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Entry
120487286 CDS
T08155
Symbol
col4a1
Name
(RefSeq) collagen alpha-1(IV) chain
KO
K06237
collagen type IV alpha
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm04382
Cornified envelope formation
pprm04510
Focal adhesion
pprm04512
ECM-receptor interaction
pprm04518
Integrin signaling
pprm04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120487286 (col4a1)
04518 Integrin signaling
120487286 (col4a1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
120487286 (col4a1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
120487286 (col4a1)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
120487286 (col4a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pprm04147
]
120487286 (col4a1)
00536 Glycosaminoglycan binding proteins [BR:
pprm00536
]
120487286 (col4a1)
Exosome [BR:
pprm04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
120487286 (col4a1)
Glycosaminoglycan binding proteins [BR:
pprm00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
120487286 (col4a1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
120487286
NCBI-ProteinID:
XP_039539520
LinkDB
All DBs
Position
Unknown
AA seq
1619 aa
AA seq
DB search
MTRGCSRSSCDGCDCSGVKGAKGEVGLPGLMGHVGFPGLQGHEGPPGPMGPKGDTGESGA
PGMKGSRGPPGVAGFPGHPGIPGLPGLEGAPGPQGIPGCNGTKGERGFDGIPGVPGLRGP
PGIPGLTGVKGDPGGVIGVPIPQKGDRGLPGPLGSPGQKGYPGQQGPLGPPGPIGPPGRP
GETGQKGEPGDKLTFIGEKGDKGEQGLIGPPGPPGRNGGFEGPGTTIYIPGPTGETGSKG
DKGEKGFCASHQRGIKGEQGPPGPIGKPGKDGQSGEKGESGFPGTPGYDGLKGDKGEKGP
PGYGFGRPGPPGPPGPPGAEGETGYPGERGNPGPPGSYIEGPPGPSGLPGEIGQKGDKGA
DGLSLKGPNGADGQPGPPGPPGPINEDCNIEKGPPGPPGPTGLPGEVGQKGDKGEKCTEC
TDSRAPGLPGPQGPKGQQGFPGQVGSKGEKGVPGPFGPPGNPGQDGSPGLMGAPGAQGEP
GDVFVPPGLKGDKGSPGTTGVRGFPGVDGLKGRDGRPGQPGAKGEPARVGTKGDRGLDGD
PGTTGPPGERGPPGIPGVGQPGEPGEKGYAGLPGTPGKQGFPGSKGEAGRVISLPGPQGA
PGARGETGRPGLQGDRGLPGERGLPGLQGTKGDPGLPGIGLPGPPGQKGYSGIPGPNGIP
GEPGQPGQDGFPGRAGTPGQKGEPGRGLPGPKGDIGPQGESGFPGEKGNLGMPGVPGTEG
RTGPPGPQGIKGNYGPPGAHGAVGPPGPPGLGEPGLPGPMGPPGSPGPLGRIGIKGEKGY
QGLPGLDMPGPPGDKGSPGFPGLTGSKGFPGEPGIPGKDGFPGERGPKGEIGSMGITGTP
GFPGSTGNPGEPGQRGDPGLIGIRGEFGDSGPKGERGEQGLQGPPGNMTDVDMVNFKGDK
GDRGDRGDPGPSGDRGNPGIRGDPGMQGKDGMPGSPGQPGQKGDSGIPGDPGRVGEPGET
GPRGDMGYPGSTGPKGHKGVGGLPGHPGFKGFDGPKGDKGDPGPEAKGLTGPPGPKGNVG
APGFPGEPGYKGQKGTMGIPGSPGSHGTKGDTGLIGYQGSPGKPGEKGVSGLPGSPGDPG
LAGRPGEPGLQGPPGPYGDKGEPGVDGIPGFTGVRGEPGLPGKGLPGSHGEPGSKGDKGN
PGLPGIPGGPGIPGTKGDKGAQGFSGELGQPGERGLPGESMEGPKGDKGPQGPPGEKGTT
GVPGQPGFPGNVGSKGEKGDVGSPGSQGSQGYKGDKGFIGGHGEPGLPGYNGQKGEAGTQ
GVPGFPGMKGEVGVFGLKGDAGDRGFPGLKGNEGPPGPPGPHTYVKGDPGRPGPQGPQGL
VGIQGLPGTKGQQGVMGPQGLKGSDGTPGYDGHPGAKGEPGQTGPSGPRGHPGPSGPDGI
PGHIGPPGPSSMDHGFLVTRHSQNIDVPQCPDGTTLIYDGYSLLYVQGNERSHGQDLGTA
GSCLRKFSPMPFLFCNINNVCNFASRNDYSYWLTSPEPMPMSMAPVTGQSIKPFISRCAV
CEAPAMVIAVHSQTIQIPTCPRGWDSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRS
APFIECHGRGTCNYYANSYSFWLATIEDSEMFTKPVPTTLKAGNLRTHISRCQVCMKRV
NT seq
4860 nt
NT seq
+upstream
nt +downstream
nt
atgacgagaggatgctcgaggtcttcatgtgacggatgtgactgcagtggtgttaaaggc
gcaaagggtgaggttgggcttcctggtttaatgggccatgtcggatttcctggattgcaa
ggtcacgagggccccccagggccaatgggaccaaagggagatacaggggagtcaggagct
ccaggaatgaaaggaagcagaggcccacccggcgtggcaggtttcccaggacacccaggt
attccaggtcttccaggtctagaaggcgcacctggacctcagggaattcccggctgcaat
ggaaccaagggggagcgtggttttgatggaattccaggtgttccaggactgaggggacca
ccaggtattccaggtttgacaggagtaaagggtgatcctggtggtgttattggagtaccc
atccctcaaaaaggagacaggggcttgccaggaccactcggttcaccagggcaaaaagga
tatcctggacaacaagggccactcggaccacctggaccaattggacctcctggaaggcct
ggtgaaactggtcaaaaaggagagccgggtgacaagctgacatttattggtgagaaagga
gataagggagaacaaggtttaatcggtccccccgggccaccgggacgaaacggtggattt
gaaggccctggcacaaccatttatattcctggaccaacgggtgaaacaggctctaaagga
gacaaaggagaaaaaggtttttgtgcatcacatcaacgtggaatcaaaggtgaacaagga
ccaccaggaccaataggtaaaccaggcaaagatggacagagtggagaaaagggggaaagt
ggcttccctggtactcctgggtatgatggcttaaagggtgacaaaggagaaaaaggacca
ccaggatatggttttggtcgtcctggccctcctggtcctcctggtccccctggagcagaa
ggagagacaggttatccgggagagcgtggaaatcctggtcccccaggcagttatattgag
ggtcctcctggaccttctgggcttcctggagagattggccagaagggagataaaggagct
gatggattgtctcttaaaggtccaaatggagctgatggacaacccggcccacccggacca
ccagggccgatcaatgaagactgtaatattgaaaaaggacctccaggccctccgggacct
acagggttgccaggagaggtgggacagaaaggcgataaaggtgaaaaatgcactgagtgc
actgattccagagccccgggattgcctggtccccaggggccaaagggtcagcaaggtttt
cctggacaagtagggagtaaaggagagaagggtgtgccaggaccttttgggcctcctgga
aatcctggtcaagatggctctccgggtttaatgggtgcccctggcgctcagggtgaacct
ggtgatgtctttgtgcctccaggcttgaaaggagataagggttctcctggtactactgga
gtcagaggattcccaggtgttgatgggctcaaaggaagagatggtcgaccaggtcaacct
ggagccaagggagagcctgctagagttggtactaagggtgatcgtggcctggatggagat
cctggtaccaccggccctccgggtgagagaggtcccccaggtatcccaggtgtaggacag
ccaggtgaacctggtgaaaagggctatgcagggttgcctggtacaccaggaaaacaagga
tttccaggaagtaaaggtgaagctggtagagtaataagtttacctggacctcagggtgcc
ccaggggcccgtggagagactggcagacctggtctacaaggtgatagaggtcttccaggt
gaacgtgggcttccaggattgcaaggaaccaaaggtgaccctgggctgccaggaattgga
cttcctgggcccccagggcaaaaaggatactctgggattccaggtcccaatggaattcca
ggagaacctggtcaaccaggccaggatggctttcctggtcgtgcagggacacctgggcaa
aaaggtgaacctggcaggggtcttcctggtcctaagggtgacataggtccgcaaggagag
tcaggatttccaggggaaaagggtaatcttggaatgccaggggttcctggaactgaggga
cgtactgggccacctggacctcaaggaatcaaaggtaactatgggccacctggagctcat
ggtgcggtggggccgccaggtcctccaggacttggagaacctggactacctggaccaatg
ggaccacctggaagccctggaccccttggtcggatcggtataaaaggtgaaaaaggttat
caaggtctacctggtctggacatgcctggccctccaggagacaagggtagccctggtttc
ccaggtctaacaggatctaagggttttcctggtgaaccaggaattcctggaaaagatggc
ttccctggtgaacgtggtccaaaaggagaaattggaagcatgggaataacaggaacccct
ggatttccaggttccacaggaaacccaggagaacctggacaaagaggtgaccctggtttg
attgggatcagaggagagtttggtgattcaggtcccaagggtgagaggggagaacagggt
ctacaggggccacctggtaacatgactgatgtggatatggtgaactttaaaggagataaa
ggagaccgaggagacagaggtgatcctggtccttctggagatagggggaaccctggaata
cgtggagaccctggaatgcaaggaaaagatggaatgccaggatcacctggacagccaggt
cagaaaggagactctggaatccctggtgacccgggacgtgttggagaacctggagagaca
ggtccaagaggagacatgggatatccaggttcgactgggccaaaaggtcataaaggtgtt
ggtgggttgccggggcaccctggatttaagggttttgatggccccaaaggagataaagga
gatcctggtccagaggcgaaaggactcaccggtccccctggaccgaagggaaatgtagga
gcccctggtttccctggtgaacctggatataagggacagaagggtacaatgggtatccca
gggagtcctggatctcacggaactaaaggagacacaggattgattggttaccaaggcagt
ccagggaagccaggcgagaaaggtgtcagtggtttgccgggctccccaggagatcctggg
ttagcagggcgtccaggtgaacctggtctgcagggtcctccaggtccatatggggacaaa
ggtgaaccaggggtagatggaattcctggattcactggagttagaggagaacccggttta
cctgggaaaggactgccaggatcccacggagagcctggcagcaaaggtgacaaaggcaac
cctggtcttcctggcattcccgggggtccaggtattcctggaaccaaaggtgataaagga
gcgcaaggattctcaggggaactaggtcaacctggagagagaggacttccaggagaatca
atggaggggcctaaaggggacaagggacctcaggggccgccaggagaaaaaggtacgact
ggtgttccaggccaacctggctttccaggcaatgttggatctaaaggagagaagggagat
gttggcagccctggatcacaaggctctcaagggtataaaggagacaaaggtttcattggt
ggccatggtgaacctggattgcctggttataatggacaaaagggggaggctggaacacag
ggtgttcctggtttccctggtatgaagggtgaggtaggagtgtttggattaaagggtgat
gcaggtgatagaggattcccaggtctcaaaggtaacgaaggcccccctggaccccctggg
ccacacacatatgtaaagggtgatcctggtcgtccaggaccacagggtccccaaggtcta
gttggaatccaaggactccctggaacgaaaggacaacagggtgtgatgggacctcagggt
ttaaaaggatctgatgggacacctggctatgatggacatcctggagccaaaggagagcct
ggacagactgggccttctggacccagagggcaccctgggccctcagggcctgatggcatc
ccgggtcacatcggccctcctggcccttcctcaatggaccatggcttccttgtaactcgc
cacagtcagaatattgatgttccacaatgtcctgatggaacaacactgatttacgatgga
tattcgctgctttatgtccagggcaacgagagatcacatgggcaagacctaggtacagct
ggtagctgcctaaggaagttcagcccaatgcctttcctcttctgcaacatcaacaacgta
tgtaattttgcatctcgtaatgactattcctactggctcacctctcccgagcctatgcca
atgagcatggcccctgttaccggtcagagcatcaaacccttcatcagcagatgtgcagtt
tgtgaggctcctgctatggtgatagcagtgcacagccagaccatccagatcccaacctgc
cctcgcggttgggattctctctggattggatattctttcgtcatgcacaccagtgctggt
gctgagggctccggtcaggctctggcctctcctggctcttgtctggaagaatttcgttcg
gctcccttcatcgagtgtcatggtcggggcacctgcaactactatgctaattcctacagc
ttctggttagccaccatagaggacagcgaaatgtttacgaaacctgtccctacaacacta
aaagccggaaatctacgaactcacatcagcaggtgtcaagtgtgcatgaagagggtatag
DBGET
integrated database retrieval system
