KEGG   Pimephales promelas (fathead minnow): 120487571
Entry
120487571         CDS       T08155                                 
Symbol
exosc5
Name
(RefSeq) exosome complex component RRP46
  KO
K12590  exosome complex component RRP46
Organism
pprm  Pimephales promelas (fathead minnow)
Pathway
pprm03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pprm00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    120487571 (exosc5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pprm03019]
    120487571 (exosc5)
Messenger RNA biogenesis [BR:pprm03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     120487571 (exosc5)
SSDB
Motif
Pfam: RNase_PH RNase_PH_C
Other DBs
NCBI-GeneID: 120487571
NCBI-ProteinID: XP_039539715
LinkDB
Position
Unknown
AA seq 230 aa
MRATSGLCVRTMMELDQSCSVLREYGSEQSLLSRPDGSSTFVQGDTSILAGVYGPAEVKV
SKEIYDRATVEVLIQPKMGLPSVRERAREQCVRETCEAALLLTLHPRSSLTVILQVVHDD
GSLLSCCLNAACMALMDAGLPMSLLFCGVTCAISKEGQIITDPSAQQEKESRALLTFAID
SVERSVLMASTSGSFSVHELQQCIAVSQKASEQIFQFYRDSVKRRYSKIQ
NT seq 693 nt   +upstreamnt  +downstreamnt
atgcgtgcgacgagcggattgtgcgtgaggaccatgatggagttggatcaaagttgttca
gttttaagggaatatggaagtgagcagagtttgttatcaagacctgacggctcttctact
tttgttcaaggggatactagtattctggctggagtttatggaccagctgaggttaaagtc
agcaaggaaatctatgatcgtgcgactgtagaggttctcatccagccaaaaatggggctt
ccaagtgtccgcgagcgggcacgagagcagtgtgtgcgcgagacctgcgaggcggctctt
ctgttgacgcttcatcctcgctcttctctcactgtcatcctgcaggtcgtccacgatgat
ggctctctgctgtcgtgctgcctgaacgccgcctgtatggctctaatggatgcagggctt
cccatgagcctcctgttttgtggcgtgacctgcgctattagcaaagagggccagataatc
acagacccctcggctcagcaggagaaggaaagtcgagcgttgttaacatttgccattgat
agcgttgagcgcagtgttttgatggcatcaacttcaggctcgttttcagtccacgagctg
cagcagtgcatcgcagtcagtcaaaaggcttctgaacagatcttccagttttatagggat
tctgtcaaacggcgatattcaaaaatacaataa

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