Pimephales promelas (fathead minnow): 120487695
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Entry
120487695 CDS
T08155
Symbol
edc4
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120487695 (edc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pprm03019
]
120487695 (edc4)
Messenger RNA biogenesis [BR:
pprm03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120487695 (edc4)
mRNA degradation factors
5'-3' decay
Decapping complex
120487695 (edc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40_WDHD1_1st
WD40
WD40_CDC20-Fz
Beta-prop_HPS5
Beta-prop_TEP1_2nd
Beta-prop_EML_2
Beta-prop_EDC4L
WD40_Prp19
WDR55
Pdc1_Ge1
HVO_2928_N
EIF3I
Uteroglobin
Motif
Other DBs
NCBI-GeneID:
120487695
NCBI-ProteinID:
XP_039539928
LinkDB
All DBs
Position
Unknown
AA seq
1393 aa
AA seq
DB search
MASSSNMDIEGATQHLRDILKLDRPGNSADSSLVESQRNLSFNGESNGVFGADIINAGGH
AEMVEPTSHNSDKLNGQDTQTICLSGDDESTCVSIRANNVEIVSSRDSSIDSKARGSNKV
KIQPVAKYDWEHKYYYGNLIAVSNSYVAYAIRGANNHSMIRVLQLGSTERSLLKGFTGAV
TDLAFAHLDSTLLACVDEAGNMFIWQLTSHNGKIQDEVIVHIHRPEDTPLNSNRRLIWCP
FIPEDNDENPEDACQTLALLHEDRAEVWDLDILRSNNSSWPVDATELKEGFITIRGHTAR
ISEGALSPDGTVLATASHDGYVKFWQIYIEGQDQPRCLHEWQPHNGRPLSCLLFCDNHKK
QDPEVPFWRFLITGADQNQELKMWCTVSWTCLQTIRFSPDPFNSSVLPSLKASLDLSAEF
LILSDVQRKVLYVMELLQNQEKGRANFTAVSEFLLTYPVLSFGIQDVARARLRHTEVLPP
DEESESMTTEGSQGPSESKSGIQIKLYCVHTKSLQDVQIWFQPNQGASSSLFMPQSGSQD
GFGFSDPLADLNVEAMSSDKESGDSGSQNDLSKILPLPCPADFMSPAPSALPKLMTPDAF
LTPSASMPASPGSSASSLTIVTAMSSSDSGARGGDDLNQSPKMSVDCGNTSLNLSASAGS
SRSNSILISGLGENIQVLMDMVSSPNPPLSLDLQAIDPMIVPQASPTRARSPDVISSAST
AMSQDIPEIASETLQRGLAADSASVLHSDSMASAASVLHLLSQRARSGAEHSLLPLELGA
ASVDGEQRLNSTPSLLETALSQENAVAAGGSCSDSSVNHAWPAAPDITRETRNSLRDNGL
GDCSREEIKDRHISSPYHRRTYHLTQNDSQDASAEQSDHDDEVASLASSSGNCGPRSSHR
LPVKDWKTSPRSSPKLKRKSKKDEGESSQSRQIENQMSTEVQDELLLMLRSQQRELAELR
QNQLDILQRVTSHMDAIQSSIMAHIEHSMLAQQEQEQRRMERILAEGQSRNQQLHDQLAQ
QLVQTLNNSLCNRLDKVLREELKKIVPQTISKSLEPVTGQMNSTIAAKLTAVEGTLKENV
TKVVKSKNTTDAIGRAAAEAMQGPIQAAYKETFQSIVLPVFERGCQSMFQQINDSFKQGT
HEYIQQLETHIKNRKQRDQDARDPVIGQLQQMIDTLQNSQDQLASTVTASVCSDVQHQLH
MIVGNLQDSILTQVQRIVKGEVSLAMKEQQAAVTSSIMQAMRSAAGTPVPSTHLDYQAQQ
ASILQLLQQGQLNEAFQQALSAADLNLVLYVCETIDSQQVFGQQPCPLHQAVLLSLIQQL
STNLSTRTELKISYLEDAVMNLDHGDPVTRDHMSAVLSQVRQKLLHFLQQDTQSPLSKRA
RRLMMMLQGLVNH
NT seq
4182 nt
NT seq
+upstream
nt +downstream
nt
atggcttccagttccaatatggacatagagggcgcgacccagcacctccgggacatctta
aaactggatcgtcccggtaattcggccgattcctctttggtagagagccagagaaatcta
tctttcaatggagagtcgaatggtgtttttggagcggatattatcaacgcaggaggacat
gcagaaatggtggagccgacttctcacaactcagacaaactcaatggacaggacacacag
actatctgcctttcaggagatgatgagtccacctgtgtctccatcagagcaaacaatgtg
gaaattgtgtccagccgtgactctagtattgacagtaaggctcgtggtagcaacaaggtt
aaaatacagccagtggccaaatatgactgggagcacaagtactactatggcaatttaata
gccgtgtccaactcatacgtggcttatgccatcagaggtgcaaacaatcattcgatgatc
cgtgtgctgcaactgggctcgacggagcgttcgctgctgaagggcttcaccggtgcagtc
acagaccttgccttcgcccacttagactccaccctcttggcctgcgtggatgaagctgga
aacatgttcatttggcagctcactagtcacaacggcaaaatacaagatgaagtgatcgtt
cacatccacaggcctgaggacactccacttaattccaaccgcagactcatctggtgtccc
tttatcccagaagacaatgatgagaacccggaggatgcatgtcagacattggcactgctt
catgaagacagagctgaggtttgggaccttgacatcctccgatccaataacagctcatgg
cctgtggatgccactgaactgaaagaggggtttatcactattagaggacacacagcacgc
attagtgagggagcgctgtcacctgatggcactgtcttggccacagcaagtcatgatgga
tatgtcaaattttggcaaatctacattgaaggccaggaccaacccagatgtttgcatgaa
tggcagccacataatggacgacccctttcctgcctgctcttttgtgacaaccacaagaag
caagaccctgaagttccgttttggcgattcctgatcactggagctgatcagaaccaggag
ctgaagatgtggtgcacagtgtcctggacctgcttacaaaccatcaggttttctccagat
ccatttaacagcagtgtgctacccagcctgaaggccagtttggacttgtctgcagagttt
cttatccttagtgatgttcagaggaaggtgttgtacgtcatggagctgttacagaaccag
gaaaaaggccgtgccaacttcactgcagtttcagagtttctgcttacataccctgtgctc
agcttcggcatacaggatgttgcccgtgcacgattgcgacacactgaggtccttccccct
gatgaggaaagtgaaagcatgacaacagaaggaagccagggaccctcagagtccaaatca
ggaatccagattaaactctactgtgtgcatacaaaatcactacaggatgtgcagatctgg
ttccagcccaatcagggggcctcatcctcccttttcatgcctcagtctggatcacaagat
ggctttggtttttctgacccgctggctgatctgaatgtggaagcaatgagctctgataag
gagtctggggacagtggatcacagaacgacctgagtaaaattctgccacttccatgtcca
gctgacttcatgagtccagccccatcagccttgcccaaactcatgaccccggacgccttt
ttgacgcccagtgcttctatgcccgcctctcctggcagcagtgcaagcagcctgaccata
gtcacggccatgagcagctcagacagcggtgcaaggggtggagatgatctaaaccagagc
cctaaaatgtctgtcgactgtggcaacaccagcttgaatctgagtgccagcgctggcagt
tcaagatccaactccatccttatctcaggccttggggaaaacatccaggtattaatggac
atggtttcctctccaaaccctcctctctccctggatctccaggccatagatcccatgatt
gtccctcaggcctctccgaccagagctcgctctccggatgtcatttcatctgcttctacg
gcaatgtcccaggacatccccgagatcgcctcggaaaccctgcagagaggactggccgct
gactcggcctccgtcctgcattctgacagcatggcttcagccgcatcggtcctccacctg
ctgtctcagagagcccggagcggtgctgagcacagtttgttgcctctcgaattgggtgca
gcatctgtggatggagaacaaagactcaatagcacaccctcactactagagacggctctg
tcacaggagaacgctgtagcagctggaggttcttgttctgacagcagcgtgaaccatgcg
tggccagcagcacccgatatcacacgagagactcgcaacagcctgagagacaatggtttg
ggagactgctctagggaggaaataaaggacaggcacatttcttccccctaccacaggcgc
acctatcacctgactcagaacgacagtcaagatgcaagtgcagagcagagtgatcatgat
gatgaggttgccagtctggcctcctcgtcggggaactgtggccctcgctcctctcacaga
ctccccgtaaaagactggaaaacatcaccacgcagctcccccaagctcaagaggaagagc
aagaaagatgaaggagagtcctcacagtctagacagattgagaaccagatgagcacagag
gttcaagatgagctcctgctgatgttgcggagccagcagagggagttagccgagctgaga
cagaaccagctggacatcctgcagagagttaccagccacatggatgccatacagagctcc
atcatggctcatatcgagcactccatgttggctcagcaggagcaagaacagagaagaatg
gagcgaattctggctgagggacaaagccggaaccaacagctccacgaccagcttgctcag
cagcttgtccagactctgaacaacagtctgtgcaaccggctagacaaagttttgcgtgaa
gaattgaaaaagatcgtcccacagaccatatcgaagagtctagaacctgtgactggccag
atgaacagcaccatcgctgccaagttaaccgcagtggaaggaacactgaaggaaaatgtc
accaaagttgttaagtccaagaacactacagatgccatcggtcgtgctgctgctgaggcc
atgcagggccccattcaggcagcatacaaagagaccttccagagcattgtgcttcctgtg
tttgagagaggctgccagtccatgtttcagcagatcaatgacagcttcaaacagggaacc
cacgaatacatccaacagcttgagacgcatatcaagaacaggaaacagcgggaccaggat
gcacgggatcctgtgattggccagctgcaacagatgattgacacactccagaattctcaa
gaccagctggcctccactgtgacggccagcgtgtgctctgacgttcagcatcagctccac
atgatcgtgggaaacctgcaggactcaatcctgacgcaggtgcagcgcatagtgaaggga
gaggtgagtctggccatgaaggagcagcaggcagccgtcacctccagcatcatgcaggcc
atgcgctcggctgcaggaactcctgtcccctccacacatctggactaccaggcccagcag
gccagcatactgcagttactacagcagggccagctcaacgaggccttccaacaggcttta
tccgcagcagacctgaatctggtgctgtacgtgtgtgagaccattgactctcagcaagtg
ttcggccagcagccctgtccactccatcaggccgtcctcctgtccctcatccagcagctc
tccaccaacctgagcacacgcacagaactcaagatcagctatctagaagatgccgtgatg
aacctggaccacggagatccagtcacccgagaccacatgtctgcagtgctgtcccaggta
cgacagaagctcctgcacttcctgcagcaggacacccagagccctctgagcaagcgtgca
cggcgcctcatgatgatgctgcagggcctggtcaatcactag
DBGET
integrated database retrieval system
