Pimephales promelas (fathead minnow): 120487734
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Entry
120487734 CDS
T08155
Symbol
blm
Name
(RefSeq) Bloom syndrome protein homolog isoform X1
KO
K10901
bloom syndrome protein [EC:
5.6.2.4
]
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm03440
Homologous recombination
pprm03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
120487734 (blm)
03460 Fanconi anemia pathway
120487734 (blm)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pprm03032
]
120487734 (blm)
03400 DNA repair and recombination proteins [BR:
pprm03400
]
120487734 (blm)
Enzymes [BR:
pprm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
120487734 (blm)
DNA replication proteins [BR:
pprm03032
]
Eukaryotic type
DNA Replication Termination Factors
Other termination factors
120487734 (blm)
DNA repair and recombination proteins [BR:
pprm03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecQ family DNA helicases
120487734 (blm)
Bloom's syndrome complex (BTR)
120487734 (blm)
FA (Fanconi anemia) pathway
120487734 (blm)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BLM_N
DEAD
BDHCT
Helicase_C
RecQ_Zn_bind
HRDC
RQC
BDHCT_assoc
Syntaxin
Motif
Other DBs
NCBI-GeneID:
120487734
NCBI-ProteinID:
XP_039540011
LinkDB
All DBs
Position
Unknown
AA seq
1422 aa
AA seq
DB search
MPSLPQNNLKEQLDRHNNAAQNKLSLLKTKPGGFCFKKKSSSGFSKVEVPQKVTVLANRS
VNVLRSCEVTKTPVTFSQKPERVAPKVNFFTAPRQKTITVNPLANPFAVNKTPLVQSTIK
ALPKSAALPKDSTDDQTVGEFKRDLSQLSFNEWDDLDDFETPVKGRVVSPVAGTSAQKPS
GSDQNTSPNSSCAKSDKTTLHGVSEDTETITAAKDVLSAANGVSTELAEIETEESPIKKG
KRHKSVQQKALLSDTEDEEIIDCISPVKNQEDFKCVTTTKENIIDVDDTDDVYENFEDFI
PPSPVPVQMSPLVSEKEKRSSDSVTHADKNVLPHESASSLSASLDKSAKDLKGTDDALFS
IMESICCLVDTIPEHELIALTSGTELLLQRAHRKRILANGAPYIASHLAQSATPCSSLLN
RRSFGVTPSSRSSSMTPMTSEKGGDFLSRNLNSSTMFLRNDSVFEDSDCIISGVETPGGS
WNPNLSSKTANGGDILNGSSPAVSKSESKTDKCYSRLSYNEANNQTVDVDQNGLFYSPKR
VDSGKRHAESSVETNTPVPNSFRADTEPADDFDIDDFDIDDFDETDFPDYFEESSSILAS
RDSSGSKTPSVREGGPSKALERKTVTPTAPKPTKTPNPEPVYRNPAHDCFRGFSFPHSPE
MMKIFHKKFGLHQFRFNQLEAINAALLGEDTFVLMPTGGGKSLCYQLPACISAGVTVVIS
PLRSLIVDQVQKLTTLDICATSLSGEKKDSEAAQIYMQLSRKDPTIKLLYATPEKVCASG
RMISALQNLFERGLLARFVIDEAHCVSQWGHDFRPDYKRLHELRRMFPKVPIMALTATAT
PRVQKDILNQLAMTRPQVFTMSFNRHNLKYSVLPKKPKKVGEECIQWIKKNYPRDSGIVY
CLSRNDCDTLADSLQRAGIAALAYHAGLSDSDREYVQNKWINQDGCQVMCATIAFGMGID
KPDVRYVIHASLPKSMEGYYQESGRAGRDGEISHCVLFYSYTDVIRIKRLIAMDKDGNQQ
SKATHINNLHSMVHFCENLAECRRIQLLAYFGEHTFNTSFCKEHPEVICDNCARPHKYKS
RNVTDDVKKIARFVQENCEKVGNRYGKSAQQNRLTLNMLVEIFLGSKSARIQSGMFGVGA
AYSKHNAERLFKKLVLDSVLMEDLYITVNGQAVAYISAGPKAMTVLNGCMQVEFIETESA
SSIRKHKASVTENVSKREEMVKKCLQELNDLCKKLGKVFGIHYYNIFSTATLKKIAETLS
ADPEVLLQIDGVTEDKLEKYGAEVIELLQKYAEWQLPAEAQAESSGWIDTARGHQNEEDD
DDEGEISSTYFRSTSGRGAKRKQGSYSRKPKRRKGSSSQNSSTKGNNCSSRGVGGYRGAS
RSAGRGSRPCPSVPAAKRPGFMSLPTPQTAARPFLKPAFSHL
NT seq
4269 nt
NT seq
+upstream
nt +downstream
nt
atgccgagtcttcctcaaaacaacctaaaggagcaactggaccgacacaataatgctgca
cagaacaagctgtcactgctcaaaacaaagcctggggggttttgcttcaaaaagaagtct
tcatcaggcttctccaaagtggaagttcctcaaaaggtaactgtcttagcaaacaggagt
gtcaatgttctccgcagctgtgaagtaaccaaaactcctgtgacattttcacaaaagcct
gaaagagtagcgccgaaagtcaacttcttcacagcacccaggcagaagacaattaccgtt
aatccattggccaacccatttgctgtgaacaaaacacctcttgtacaatctactattaag
gctttgccaaaatctgcagccttacctaaggattctactgatgatcaaactgttggtgaa
tttaagcgtgacctctctcaactttccttcaatgaatgggatgatttggatgattttgaa
accccagtcaagggaagggtagtgtccccagttgcagggacttctgcacaaaagccaagt
ggatcagaccagaacacatccccaaattcctcttgtgccaagagtgacaagactacatta
cacggagtttcagaggatacagaaaccataactgccgcaaaggacgtcctgtcagcggct
aatggtgtcagcacagagcttgctgagatcgagacagaggaatcgcccataaaaaaaggc
aaaagacataaatcagtccagcaaaaggcattactgagtgacactgaggatgaagaaatc
attgactgtatttcacctgtcaaaaaccaggaggatttcaagtgtgtgacaactaccaag
gaaaacatcatagatgttgatgacactgatgacgtttatgaaaattttgaggatttcatc
ccaccttcccctgttcctgtgcagatgagtcccttggtctcagaaaaggagaaaaggtca
tctgactctgttacccatgctgacaaaaatgtactacctcatgaatcggcttcaagcctg
tcagcatccttggataaatctgccaaagacttaaaaggaactgacgatgctctctttagt
attatggagtctatttgttgtctagtggacactattccagagcatgagctcatagcactg
accagcggtacagagctattgctacagagagcacacaggaaaaggattcttgctaatggt
gcaccatacattgcatctcatttagcccaatcagcaactccatgttctagcctgctgaac
agacgcagttttggagtcacgccctctagtcggtcatcatcgatgaccccaatgacatca
gaaaagggaggggactttctgagtcgtaatcttaattcctccaccatgtttctgcgtaat
gactccgtatttgaggactctgactgcatcatcagtggtgttgaaacccctggtggttcc
tggaatcctaacttgtcctcaaaaacagcaaatggtggggacatcttaaacgggtcaagt
ccagctgtaagcaaatctgagtcaaagaccgataagtgctactctaggttgtcctataat
gaagcaaacaatcagactgtggatgtagatcaaaatggcctgttttattcccccaagaga
gtggattcaggcaagagacatgcagagagcagtgttgaaaccaacacgccagtacccaac
agttttcgagcagacacagagccagctgatgactttgacattgatgactttgacattgat
gattttgatgagacagactttccagattactttgaagaatcttcaagcatcttggcatca
agagacagctctggttcaaaaacaccatcagtgcgggagggagggccatcaaaagcgttg
gagagaaagacagtcacacctacagcaccaaaacctaccaaaacacccaaccctgagcct
gtgtatagaaacccagctcatgactgctttagaggcttcagctttcctcatagcccagag
atgatgaagattttccataagaagtttgggctgcatcaattccgcttcaatcagctggaa
gccattaatgctgcactattaggagaagacacgtttgtactgatgcctacaggtggtggt
aaaagtctctgctatcagcttcctgcttgcatctctgctggggtgactgtagtcatatct
cctctacggtctctcattgttgaccaggtccaaaaactcaccacattagatatttgtgca
actagtttatcaggcgaaaaaaaagacagtgaggctgcacagatctatatgcagttgtct
agaaaggatcccactattaaactactttatgccactcctgagaaggtgtgtgcaagtgga
cgaatgattagtgcacttcagaatctgtttgaaagaggtttgctggctcgctttgtcatt
gatgaggcccattgcgtcagtcagtggggtcatgatttcaggccagactacaagcgcttg
catgagctcaggcggatgtttcccaaggttcctataatggcactgacagccacagctact
cctagagttcagaaagacattcttaaccagctagcaatgacccgtcctcaggtattcaca
atgagctttaacaggcacaatctcaaatactccgttttgccaaaaaagcccaagaaggtt
ggtgaggaatgcattcagtggattaagaaaaattacccacgtgactcggggattgtgtac
tgtttgtctcgtaatgactgtgacactctggctgacagtcttcagagggctgggattgca
gcgctggcttatcatgctggcctgagtgacagtgacagggaatatgtccagaataaatgg
atcaaccaggatggctgccaggttatgtgcgccaccattgcatttggtatgggtatcgat
aagcctgatgtgcgttatgtgatccatgccagtctgcccaagtcaatggagggttactac
caggagtcaggcagagctggtcgagatggagagatttcccactgcgtcctcttctattcc
tacactgacgttatccgcatcaagagactcattgctatggataaagatggcaaccagcaa
tccaaagccacccacataaacaaccttcacagcatggtgcatttctgtgagaatctggcc
gagtgcaggaggatccagttgctggcttactttggagagcacacgtttaatacaagcttc
tgtaaagagcatcctgaggtcatctgtgacaattgtgccagaccacataaatataaatca
agaaatgtcaccgatgatgtgaagaagattgcgaggtttgtgcaggagaactgtgagaag
gttggaaaccgatatggcaaatctgcccagcagaacaggcttaccctcaacatgctggtc
gagatatttctgggctccaagagtgctcggatccagtccggaatgtttggggtaggagcg
gcatattccaaacacaatgcggagaggctctttaaaaaactggtgctggatagtgttctg
atggaggacctgtacatcactgttaatgggcaggcagtagcctatatctctgcagggcct
aaagctatgactgtactgaatggctgcatgcaggttgaatttattgagactgagagtgca
tccagcatccgaaagcacaaagcctctgtgactgagaatgtgtctaagagagaagagatg
gttaaaaagtgtctgcaggaactcaatgatctgtgcaagaagctgggcaaagtcttcggc
attcattactacaacattttctccacagccacactcaaaaagatagctgagaccctctcg
gctgatccggaggtgctgttgcagattgacggtgtgaccgaagacaagctggagaagtat
ggcgctgaggttattgaattgctgcagaagtacgccgagtggcagctacctgctgaggca
caggccgagagttcaggatggattgacacagcaagaggccaccagaatgaagaagatgat
gacgatgaaggtgaaatctcatcaacttatttcagaagcacctcaggacgtggagcaaag
agaaagcaagggtcttactccagaaaacccaaaagaaggaaaggttccagcagccagaac
tcctccactaaaggcaataactgttcatcaagaggagtaggaggatacaggggtgcgagc
cggagtgcaggcaggggttccaggccctgtccgtcagtcccagcagcgaagaggcccggc
ttcatgtctttgcccaccccccagactgccgctcgtccattcctcaaaccagcattctcc
cacctctag
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