Pimephales promelas (fathead minnow): 120488162
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Entry
120488162 CDS
T08155
Symbol
rb1cc1
Name
(RefSeq) RB1-inducible coiled-coil protein 1
KO
K17589
RB1-inducible coiled-coil protein 1
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
120488162 (rb1cc1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pprm01009
]
120488162 (rb1cc1)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pprm04131
]
120488162 (rb1cc1)
03029 Mitochondrial biogenesis [BR:
pprm03029
]
120488162 (rb1cc1)
Protein phosphatases and associated proteins [BR:
pprm01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
120488162 (rb1cc1)
Membrane trafficking [BR:
pprm04131
]
Autophagy
Autophagosome formation proteins
ULK complex
120488162 (rb1cc1)
Mitochondrial biogenesis [BR:
pprm03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
120488162 (rb1cc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ATG11
ATG17_like
TBK1_ULD
ubiquitin
DUF6950
Motif
Other DBs
NCBI-GeneID:
120488162
NCBI-ProteinID:
XP_039540628
LinkDB
All DBs
Position
Unknown
AA seq
1618 aa
AA seq
DB search
MKLYVFQVNNGSTLTFDTELAVQTVLDLKHAIQAKYKIAIQHQVLVVNGGECMVAERRVC
SYSAGTDTNPIFLFNKEMILCDRAPTIPKTTFTIENEMELKVEESLMMPAVFHTVASRTQ
LAVEMFEVAKKLCSFCERLVHDEHLQHQGWAAIMANLDDCTLSYQKLLMKFDTAYTNYQQ
DFEDIKIKLTKLGTAVSVMAKIPLLECLTRHSYRESLEKSCSPHPRTTDDEDDEAGETST
QSAILRPADGQRNRKTPSPVSASGETSSQASSSPQDRLKSSCSLKEALQEEEESPERGAI
PFFNVTLLDWINVQDRPNDVESVVRKCFDSINRLDPRIIQPFLTECRETITKLDNQNMKA
IKGLEDRLYALDQMIASCKKLVNEQKELAQGFLANQKRAENLKDTSVLPDLCLSHANQLM
IMLTNHRKLLDIKQKCTTAKQELANNLQVRLKWCCYVMLHADQDGEKLQALLRLLTELLE
RVRVVEALSTVPQMYCLAVAEVVRRKMFIGHYRQWANALVRDGKNLYEAEKVKRETFGKL
FRKSFLRNRLFRGLDSWPPSSFCTRRPRKFDFELPDISLNDLQYLKSCCPSEVQPYLRVP
TLCDFEPLNHHVEVLHQLVQAAQSVDEMSQTITDLLNEQKISCSQSAQRSPALTPRSEST
TAVTSTSTKTLSTLILKAPDCQPMVLPGPLEDLSPDSIDAQTFDFETIGHPNMDPVLQQG
SLDLDSLAESPESDFMSAVNEFVIEENLMSPNPISDPTSPEMMVESLYSSVINAIDSKRI
QDTTTLEKENSKITALKLSADRYRSAAEESKNNLRKVKEDLYHFRGLVLKEQRDFGFALK
TMTIEVRNALSSVRYCHEEKLRETQQSNLQSLKDDHEKQILTLTDELEDNRKIVRDVQRA
MLELEGLVERKEKEISQLESERGRYMQELQDLHKQTVQDLEEKILKQSEELKATLLSKDE
LARQLENLHFEIEHGQQKIRLEMENAEKVHLQELETRLNQQHEAMLQSLRLEKETALEKL
VQENLVKLRDLMDSHSAELKEREGRSKDLEARVSELADARCKLEVEMALKEAEMEDMRLQ
YEEAKSTQEEVLKSELTTQTTTLQMQIDKLNQQLLQKNEEYEVGLAELRALMRLEKDHCI
SELVDRHEEESTLFRHKFSALKQKSQDAEKDCEERVQKIQHDHQDQLAALQREKQEEQRA
FQEKEQNLQTVIGDLQAENSLLSGRLEQERVEALQRAEKEKEEAVKAAIQEALRDFQLQK
EETETRLLGTIDLLESQLKDRQSTDIVAASVGQSEAGVETGAALDSGQWTEERASLLAQL
EILERMKNEEMQNLKTSLIAEQQTNFNTVLTREKLKKEQIINEITEKLKNVLQQQEKDKG
LIETLSEDRATILQEKKQMEEELNRLRSTVLVSSSFFPPNPIPVVAEVHGACGPAHTEVL
SPSTPDPERLALMSAFNDEERVESAVEASMMTVHDNSLLSEEKQRILMLERTLHMKEEEN
KRLSQRLMSQSMSSVSSRHSEKIAIRDFQVGDLVLIILDERHDNYVLFTVGPTLYFLHSE
SLTALDLKPATGATRRPWVLGKVMEKEYCQAKKAQNRFKVPLGTKFYRVKAVPWNKKV
NT seq
4857 nt
NT seq
+upstream
nt +downstream
nt
atgaagctgtatgtgtttcaagtcaacaatggaagcacattaacatttgacactgaactt
gctgtccaaactgttttggaccttaaacatgccattcaggccaaatataaaattgcaatc
cagcaccaggtgctggtggtcaatggaggggagtgtatggtggcagagaggcgtgtgtgc
agctacagcgccggcacggacaccaacccgatcttcttgttcaacaaagagatgatcctg
tgtgaccgagcgccaaccatccccaaaacaaccttcactatagagaatgagatggagctg
aaggtggaggagtccctgatgatgcctgccgtctttcacactgttgcctcccgcactcaa
ctggctgtggaaatgtttgaggttgccaagaagctttgctcattctgtgagcggctggtc
cacgatgaacaccttcagcaccagggatgggcggccatcatggctaacctggacgactgc
accctgtcctatcaaaaactcctcatgaaatttgacactgcttacacaaattaccaacag
gattttgaagacatcaaaataaaactcaccaagcttggcactgctgtctcggtcatggcg
aagattccactgctagagtgtttgactcggcatagctacagagaaagcttggagaagtcc
tgctcccctcacccaagaaccacagatgatgaggatgatgaagcaggagaaacatccacc
cagtccgccatcctccgtcccgccgacggccagaggaatcgaaagacaccttcgccggtc
tctgcttcaggagaaacatcatcccaggcgtcctcgtctcctcaggacagactgaagagc
agctgtagtctaaaggaagctctacaggaagaggaggagtctccggagaggggagcaata
ccctttttcaatgtcacacttttggattggatcaatgttcaggacagacccaatgatgtg
gagtcggtagtgaggaagtgttttgactcaatcaacaggctcgatccacgaatcatccaa
ccctttctaactgaatgccgtgagacgattaccaaattggataatcagaacatgaaggcc
atcaaaggtctagaggaccgattgtatgcgcttgaccagatgatagcaagctgtaaaaag
ttggtaaatgaacagaaggaactcgctcagggatttcttgccaatcagaagagggctgaa
aacctgaaggacacctcggtgctgcctgacctgtgtctgagtcacgccaaccagctgatg
atcatgctgaccaatcacaggaagctacttgacatcaagcagaagtgtaccactgccaaa
caggagctcgccaacaaccttcaagttcgactcaaatggtgctgctacgtgatgcttcac
gctgatcaggatggagagaagctgcaggctctcttgagattgctgacagagctgctggag
cgcgtacgggtggtggaagcgctcagcactgtgccacagatgtactgtcttgccgtagcg
gaggtggtcagacgcaaaatgttcataggacactacagacaatgggccaatgctcttgtc
agagatggaaaaaacctctatgaggcagaaaaagtaaaaagggaaacctttgggaagctc
ttcaggaaatcgttcctcagaaatcggttgtttcgaggactggactcatggcccccctct
tctttttgcactcgaaggcctcgaaagtttgattttgagcttccagatatttccctgaat
gaccttcagtatctcaagtcctgttgtccttccgaagttcagccttacctcagggtcccc
acattgtgtgactttgagcctcttaaccatcatgttgaggttctccatcagctggttcag
gctgcgcagagtgtggatgagatgtcacaaactatcacagacctactaaatgaacaaaag
atttcctgtagccagagtgctcaaagatcccctgcattaacacccagatctgaaagcaca
actgctgtcacctctacctccaccaaaactttgtccactctcattttaaaagcaccggac
tgccaacccatggtgcttcctggtcccctggaggacctatcgcccgacagcatagatgcc
cagacctttgactttgaaaccattgggcaccccaatatggatcctgtattacagcagggg
tcattggacttggactcattggcagaaagtccagagtcagacttcatgtcagctgttaat
gaatttgttattgaggagaacttgatgtcacctaatcccatcagtgatcctacaagccca
gagatgatggtggagtctctttactcctctgtcattaatgcaatcgatagcaagcgtatc
caggacactactacccttgagaaggaaaattcaaagatcacagctctcaagctatcagca
gaccggtaccgttccgctgcagaagaatccaagaacaatttaaggaaagttaaagaagac
ctttaccactttcgaggtcttgttctgaaggagcaacgagactttggatttgccctgaaa
accatgaccattgaggtccgaaacgcactcagcagtgtccgatactgtcacgaggagaaa
ctaagagaaacgcaacagtccaatcttcagagtttgaaggacgatcatgaaaagcagata
cttactctcacggacgagctagaagacaatcggaagattgtccgagatgtccagagagcg
atgctggaattggaggggcttgttgagcgcaaggagaaggaaatatcccagctggagagt
gagaggggccgttatatgcaagaactgcaagatcttcacaagcaaactgtgcaggacctt
gaggagaagatcttgaagcaaagtgaagaactgaaagctacactgctgtccaaggacgaa
cttgccaggcaattggagaacctgcactttgagatcgagcatggccaacagaaaatcaga
ctggagatggagaatgcagagaaggtgcaccttcaagaactggagacacggttgaaccaa
cagcatgaagcaatgctgcaatctttaagactggaaaaagaaactgcgcttgaaaaactt
gtccaggagaacctggtgaaactaagagatctgatggattcccattctgccgaactcaag
gagcgcgagggacgctcgaaagacttggaggctcgtgtttcagaactcgcagatgcccgc
tgcaaactggaagtcgagatggctctcaaagaggccgaaatggaggacatgagactccag
tacgaggaggccaaaagcactcaggaagaggttttgaaatcggagcttaccacccaaaca
accaccttgcagatgcagatcgacaagttgaaccagcagctcctgcagaagaacgaagag
tacgaggtgggcctggctgagctccgagcgctcatgaggttggagaaggaccactgcatc
tctgaactcgttgatcggcacgaagaggagagcaccctgttccgccataagttttcagcg
ctcaagcagaagtcgcaggatgcggagaaagactgcgaggaacgagtccagaagatccag
catgatcaccaggaccagcttgctgccttacagagggaaaagcaggaggagcagagggct
ttccaagagaaagagcaaaacctacagactgttattggagatctgcaggcggaaaactcg
ctattgtcaggaagactggagcaggagagggtggaggccctgcagagggcagagaaggag
aaagaggaggcagtcaaagctgcaatacaagaggccttaagagactttcaactccaaaaa
gaggagactgagacaagactgttaggaacaattgatctacttgaaagtcagctaaaagac
agacaatctactgacatagtggcagcttctgtagggcagtctgaggctggtgtggagacc
ggcgctgcactagacagtggtcagtggaccgaggagagggcatcgctcttggcccaacta
gagatcttggaacgcatgaagaatgaagagatgcagaacctgaagacctcactcattgct
gaacagcagacgaacttcaatacagttctgacgcgggagaaactcaagaaagaacagatc
atcaatgaaatcacagagaagctcaaaaacgtgttgcagcaacaagagaaagataaaggc
ctgatcgaaacgctctccgaggaccgtgccaccatccttcaagagaagaaacagatggag
gaggaactcaaccgtctgcgaagcacagtcctcgtctcttcatccttctttccgcccaat
cccatccctgtcgttgcggaggttcacggtgcctgtggtcccgcccacacagaagttctg
tcgccgtccacccctgacccagagagattggcgctcatgtctgcattcaatgatgaggag
agggtggagtcggccgtggaggccagcatgatgacagtgcatgacaactccttgctatct
gaagagaaacagcgcatactgatgttggaaaggaccttacatatgaaagaggaagagaac
aagagacttagtcaaagattgatgtcacagagtatgtcatccgtgtcgtcgcggcactcg
gagaaaatcgccattcgagattttcaggtgggcgacttggttctcataatcctggacgag
aggcacgataattacgttctcttcactgttggtcccaccctttatttcctgcactcagag
tccctcactgcgctggacctcaaaccagcgacaggagcaacaagacggccgtgggtttta
ggaaaagtcatggagaaggaatattgccaagctaaaaaggcccaaaaccggttcaaagtt
cctctcggcaccaaattctacagagtaaaggccgtgccatggaacaagaaagtgtaa
DBGET
integrated database retrieval system
