Pimephales promelas (fathead minnow): 120488332
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Entry
120488332 CDS
T08155
Symbol
lrrc4bb
Name
(RefSeq) leucine-rich repeat-containing protein 4B
KO
K16360
netrin-G3 ligand
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm04514
Cell adhesion molecule (CAM) interaction
pprm04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
120488332 (lrrc4bb)
04517 IgSF CAM signaling
120488332 (lrrc4bb)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pprm04515
]
120488332 (lrrc4bb)
Cell adhesion molecules [BR:
pprm04515
]
Immunoglobulin superfamily
NGL family
120488332 (lrrc4bb)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
I-set
Ig_3
LRR_1
ig
LRR_9
LRR_14
V-set
LRRNT
Ig_2
VEGFR1-3_N_Ig-like
Ig_6
DUF4307
Motif
Other DBs
NCBI-GeneID:
120488332
NCBI-ProteinID:
XP_039540953
LinkDB
All DBs
Position
Unknown
AA seq
721 aa
AA seq
DB search
MQAAIVTGLFSPSPLIWLVQLLLWPHLLGPRLAEASPACPNPCSCSNQASRVICTRKGLN
EVPQSISSNTRYLNLQENSIQLIRSDTFKHLNHLEILQLSKNQIRQIEVGAFNGLPNLIT
LELFDNRLPLVPSQAFEYLSKLRELWLRNNPIETLPAYAFHRVPSLRRLDLGELRKLSFI
SEAAFEGLLNLRFLNLGMCGLKDVPNLTPLVRLEELELSGNQLGVVRPGSFQGLVSLRKL
WLMHSRISVIERNAFDDLKNLEELNLSHNSLHSLPHDLFTPLQQLERVHLNHNPWVCNCD
VLWLSWWLKETVPDNSTCCARCHAPPGTKGRYIGDLDQRDFTCYAPVIVEPPTDLNVTEG
MAAELKCRSGTSMTSVNWLTPNGTLMTHGAYKVRISVLHDGTLNFTNVTMQDTGPYTCMV
TNSAGNTTATAVLNVSAPDPGSGYSYFTTVTVETVETGQEGHESARQFVNETIISFPGSP
ATSASAGPTSSMLSSMSPRTTRAPDRPFTVSITDVANLSGLEDVMKTTKIIIGCFVAITF
MAAVMLVVFYKLRKQHQLHKHHGPARAIEIINVEDEIGSAGASGITGGSTVHTGAGTGGG
SGQSPRIHDPEIITLPSVGQSDHLNHYYKAHHFNNNVLGLNMATGMLNNKPNLTSQNQAS
TMKIGTGDIIPGSTSPPLPMPIPMAMTFHGTLKGLSHVPNMQTEPLLLSNGSKESVQETQ
I
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atgcaggctgctatcgtaacaggccttttcagcccctcccccctcatctggttggtccaa
ctgttgttgtggccacacctccttggacctcgcttggctgaagccagtcccgcctgcccc
aatccctgtagctgttccaatcaagccagtcgagtgatctgtaccagaaaaggcttaaat
gaagtcccacagagtatctcgtccaatacgcgatacctcaacctccaggagaactccata
cagttgatcaggtcagacaccttcaagcacctaaatcatctggagattttacagttgtct
aagaaccagattcgtcagatagaagtgggagcgttcaatggccttcccaatctcatcacc
ctggagctttttgacaacagactcccactggtgccatcacaggcattcgagtacctgagc
aagcttcgtgaactctggctgaggaacaaccccatagagacactcccagcgtacgccttc
caccgcgtgccgtcactgcgacggttagacctcggtgagttgcgcaaactcagtttcatc
tcggaggccgcattcgaagggttgctgaacctacgtttcctgaatctgggcatgtgcggg
cttaaggacgtacccaacttgacgcctctcgtgcggttagaggaactggagctgtcggga
aaccagctgggcgtggtgcgtcctggatcgttccaaggcctggtgtccctacgcaaactg
tggctcatgcactctcggatctctgtcattgagaggaatgcctttgatgacctcaagaac
ctggaggagctcaatctgtcgcataactctctgcattcattgccacacgacctcttcact
ccactgcagcagttagagcgtgtccatctgaaccacaacccttgggtttgcaactgtgat
gtgctgtggttgagctggtggctcaaagaaaccgtacctgataactccacttgttgcgca
cgatgccatgccccaccaggtactaagggcaggtacatcggtgaccttgaccagagagac
ttcacctgctatgcacctgtgattgtggagccaccaacggacctgaacgtgaccgaggga
atggcggcggagctaaaatgccgcagcgggacatccatgacttctgtgaattggttgacc
cccaatgggaccttgatgacccatggagcgtacaaggtccggatctctgtcctgcatgac
ggaaccttgaatttcaccaatgtgaccatgcaagacaccggaccatacacctgtatggtc
accaactctgctggcaacaccacagcgactgctgtgttgaacgtctcagctcctgatcca
ggcagtggttacagctacttcacaactgtcactgtcgaaaccgtagagacggggcaagag
gggcacgaatcagctcggcagttcgtcaacgagaccatcattagctttccgggatcgccg
gccacatcggcatcagcaggtcccactagttcgatgctgtcctccatgtcaccacgaact
acgcgtgcacccgatcgcccgttcaccgtctccatcacagacgttgccaacctgtcgggt
cttgaggacgtaatgaagacaactaagatcatcataggctgctttgtggccatcaccttc
atggcggccgtgatgctggtcgtcttctacaagctccgcaagcagcaccaactgcacaaa
caccatggcccggcgcgcgccattgagatcatcaacgtcgaagatgagattgggtctgca
ggagccagtggcatcacaggagggagcaccgtccacactggagcgggaacgggtggagga
agcgggcagagtcccaggatccatgaccccgagatcatcaccctgccgagcgttgggcaa
tcggatcacctgaaccactactacaaagcgcaccactttaacaacaacgtgctgggctta
aacatggcgactggaatgctcaacaacaaacccaatcttacctcccaaaatcaggcttcg
accatgaaaatagggaccggtgacatcatccctggctcgacctcccctcccctgccaatg
cccatcccaatggcgatgactttccatggaactctgaaaggccttagtcacgttcccaat
atgcagactgagccgctgttgctatcgaatggctccaaggagagcgttcaggagacccag
atctga
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