Pimephales promelas (fathead minnow): 120488694
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Entry
120488694 CDS
T08155
Symbol
si:ch211-141o9.10
Name
(RefSeq) probable endonuclease 4 isoform X1
KO
K10771
AP endonuclease 1 [EC:
3.1.11.2
]
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
120488694 (si:ch211-141o9.10)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pprm03400
]
120488694 (si:ch211-141o9.10)
Enzymes [BR:
pprm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
120488694 (si:ch211-141o9.10)
DNA repair and recombination proteins [BR:
pprm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
120488694 (si:ch211-141o9.10)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AP_endonuc_2
LpoB
Motif
Other DBs
NCBI-GeneID:
120488694
NCBI-ProteinID:
XP_039541247
LinkDB
All DBs
Position
Unknown
AA seq
330 aa
AA seq
DB search
MASRRKGKKRKTEEVTETKEQQHFDAELSDGGSREEEMTQKRKIKAKKKYIGAHVSVSGG
IWKAVESSVTMGGHAFALFLGSQRSWTRPALDPAAAVKFQIACAQHGFDPIHILPHGSYL
MNCGSPKEDVFSKSKSMLVDELSRCSALGLSQFNFHPGASLDSSPEKCMEKIAQAINHAH
QQTPAVITVLENMSGQGSTVGGQFIELRSIIDRVRDKTRVGVCLDTCHAFAAGYDISPPG
GVKNMLDEFDRVVGLHYLRAVHLNDSKGTLGSHLDRHEDIGRGQIGITAFREIVNEPRLD
NIPLILETPGRPGFEYAEQIELLYSLCEKR
NT seq
993 nt
NT seq
+upstream
nt +downstream
nt
atggcctcacgaagaaaaggcaagaagagaaagacggaggaggttactgaaacaaaggag
caacaacattttgatgcagaactatcagatgggggcagcagagaagaagaaatgacacag
aaaagaaagataaaggcaaagaaaaaatacataggcgctcacgtctcagtatcaggagga
atatggaaagcagtcgaatcaagtgtgaccatgggaggtcatgcttttgctcttttcttg
ggctcccagcgctcctggaccagaccagcccttgatccagctgctgcagttaaatttcaa
atagcctgtgctcaacatggcttcgatccgatacacatcctgccacatggatcttatttg
atgaactgcggttcccctaaagaagatgtgttcagtaagagcaagtctatgcttgtggac
gaactgagtcgctgcagtgcactgggtctcagccagtttaactttcaccctggagcttct
ttggactccagccctgagaaatgcatggagaaaattgcccaagctattaaccacgcacac
cagcaaaccccggccgtcattacagtgcttgaaaacatgagtggccagggcagcactgta
ggtgggcagttcattgaactgagaagcataatagaccgggtgcgtgacaagacacgtgtt
ggggtgtgtctggacacttgccatgcttttgcagcaggctatgacatttcaccacctgga
ggagtaaagaatatgcttgatgaatttgaccgtgtggttggtttgcattatttgagagct
gttcatttaaatgactctaaaggaacattaggcagccatctggaccgccatgaagacatt
ggacgtggccaaataggtattactgctttccgagaaattgtgaatgagcctcgactggat
aatatccctctgattctagaaacacccggtcgcccaggctttgagtatgctgaacagata
gagctcctttactccctttgtgaaaaaaggtga
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