KEGG   Pimephales promelas (fathead minnow): 120488736
Entry
120488736         CDS       T08155                                 
Symbol
taf5l
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L isoform X1
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
pprm  Pimephales promelas (fathead minnow)
Pathway
pprm03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:pprm00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    120488736 (taf5l)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pprm03021]
    120488736 (taf5l)
   03036 Chromosome and associated proteins [BR:pprm03036]
    120488736 (taf5l)
Transcription machinery [BR:pprm03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     120488736 (taf5l)
   Coactivators
    SAGA/TFTC/STAGA complex
     120488736 (taf5l)
Chromosome and associated proteins [BR:pprm03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     120488736 (taf5l)
    STAGA complex
     120488736 (taf5l)
    TFTC complex
     120488736 (taf5l)
    SAGA complex
     120488736 (taf5l)
    SLIK complex
     120488736 (taf5l)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st Beta-prop_CAF1B_HIR1 WD40_CDC20-Fz Beta-prop_EML_2 Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd EIF3I WDR55 Beta-prop_WDR90_POC16_2nd TFIID_NTD2 Beta-prop_EML Beta-prop_TEP1_C WD40_MABP1-WDR62_1st Beta-prop_WDR75_1st Beta-prop_IFT122_1st NBCH_WD40 WDR90_beta-prop_4th Beta-prop_RIG_2nd Beta-prop_SCAP ANAPC4_WD40 Beta-prop_IFT140_1st Beta-prop_Vps41 RMC1_N Beta-prop_DCAF4 Beta-prop_HPS5 Beta-prop_EIPR1 WD40_RFWD3 Beta-prop_SPT8 PROPPIN Beta-prop_IP5PC_F Beta-prop_WDR19_1st PEP5_VPS11_N Beta-prop_WDR75_2nd WD40_like Beta-prop_ELP1_1st
Other DBs
NCBI-GeneID: 120488736
NCBI-ProteinID: XP_039541303
LinkDB
Position
Unknown
AA seq 600 aa
MKRVRPEQIQSVVSQYLKRRQYIDNDGSLKGAKLSQSAEEMAASLTVQMESSCANVVSAA
PCQSDPLQYETQFSRLRSFLQEAEAPLVKEVSGILFPLFLYLHLDMARCGLKGAVDSFYG
RFHSLFQQDPEQKAIVDLLRGALTLQDVTSNPKLGSLLDHKYVVHLTDQAYGYLLRYLQS
DDNSAICWALSKHVKVEVTASRRTDYQLYGAAGNATSTPSSSTTWAALDGSEAAERVEVT
AGLPQNEAALDTLQDCIKRVREGPPSLTTVCFYAFQHTDQLLNTAEVSADSRLLAAGFDN
SAVKLWSLRARKLKAGPHWADVSRIRLACDVLEEEADDEDASGSEIKTLRAHSGPVYRTA
FLTDGSGLLSCSEDSTVRFWDLTSFTNTVLYRGHAYPVWDVDVSPCSLYFATASHDRTAR
LWSFARTYPLRLYAGHLSDVDCVKFHPNSNYVATGSTDKTVRLWSTQQGASVRLFTGHRG
PVLSLAFSPNGKYLASAGEDQRLKLWDLASGSLFKDLRGHTDSITSLSFSQDSSLVASAS
MDNSVRVWDIRNAHGSAPTDGSSSELIGQYTGSTSNILNVQFMACNLLLVTGTALEKQEQ
NT seq 1803 nt   +upstreamnt  +downstreamnt
atgaagcgtgtccggccggagcagatccagagcgtggtgtcccagtacctgaagaggaga
cagtacatagacaatgatggctctctgaagggggccaaactctcccagtccgcggaggag
atggctgccagtctgacggttcagatggagtcgagctgtgcgaatgtggtgtcggccgcc
ccgtgtcagtccgacccgctgcagtacgagacccagttctccagactgcgctccttcctg
caagaggccgaagcgccgctagtgaaggaggtgagcggcatcttgtttccgctcttcctc
tacctgcacctagacatggcgcgctgtggcctgaagggggcggtagactcgttctacggg
cgctttcactcgctcttccagcaggaccctgagcagaaagccatcgtggacctgctacga
ggagccctcacactgcaggatgtgacctcaaaccctaaactcggttccctcctggatcac
aagtacgtggtgcacctgacggatcaagcgtacggttacctgctgcggtacctgcagagc
gacgacaacagcgccatctgctgggcgctcagcaagcatgtcaaggtggaggtgacggca
tcgcggcgaaccgactaccagctgtacggcgcagcgggaaacgccacctccactccctcc
tcctccacgacatgggccgccctggatgggtctgaggcggcggagcgcgtggaggtcacg
gcggggttaccgcagaacgaggcggcgctggacacgctgcaggactgcataaagcgcgtg
cgagaaggtccgccttcgctcaccaccgtctgcttctacgccttccagcacacggatcag
ctgctcaacacggccgaggtgtcggcggacagccgtctgctggcggcgggcttcgacaac
tccgccgtcaagctgtggagtctgcgggccaggaagctgaaggccgggccgcactgggcc
gacgtgtccaggatacgactcgcctgtgatgtgctggaggaggaggcagatgacgaggac
gcctcgggcagcgagataaagaccctgcgcgcgcacagcggcccggtgtatcgcacggcg
ttcctgacggacggctcaggcctgctgtcctgctcggaggactcaaccgtgcgcttctgg
gatctgaccagcttcaccaacaccgtcctgtaccgcggccacgcctaccccgtgtgggat
gtggacgtcagtccctgcagcctttacttcgccacggcgtcccacgaccgcaccgcgcgc
ctctggagcttcgctcgcacgtacccgctccgcctgtacgccggacacctctccgacgtc
gactgcgtcaaattccaccccaactccaattacgtggcgacgggttcgacggataaaacg
gtgcgcctgtggagcacccagcagggggcgtccgtgaggctgttcaccgggcaccgcggc
cccgtgctctcgctggcgttctcgcccaacgggaagtacctggcgtcggccggggaggac
cagagactgaagctgtgggacctggcgtccgggagcctgttcaaagacctgcgcgggcac
accgacagcatcaccagcctgtccttcagccaggacagcagtttagtggcctccgcctct
atggacaactctgtgcgcgtgtgggacatacgaaacgcgcacggctccgcccccaccgac
ggctccagcagcgagctgattggacaatacaccgggagcactagcaatatcctcaacgtg
cagttcatggcctgcaacctgctgctggtgacgggcactgcgctggagaaacaggagcaa
tga

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