Pimephales promelas (fathead minnow): 120488784
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Entry
120488784 CDS
T08155
Symbol
abca1a
Name
(RefSeq) phospholipid-transporting ATPase ABCA1a isoform X1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm02010
ABC transporters
pprm04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
120488784 (abca1a)
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
120488784 (abca1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pprm02000
]
120488784 (abca1a)
Transporters [BR:
pprm02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
120488784 (abca1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
DUF4162
DUF7447
Motif
Other DBs
NCBI-GeneID:
120488784
NCBI-ProteinID:
XP_039541369
LinkDB
All DBs
Position
Unknown
AA seq
2267 aa
AA seq
DB search
MAFSTQLGLLLWKNFTFRRRQTIQLLIEIIWPLFIFFILISVRIYYPPYEQHECHFPNKA
MPSAGTLPWVQGIICNANNPCFRYPTPGETPGVVGNFNDSIISRLFIDAKKILLYSQQDK
SFEGFKGLVRALRKLQRNTEGFKLKDFLHDNETLSEFLEKNATLPKHAVRQIVEANVNLE
KVLIKGFGVHLRDLCNTTSLEDFVTIADKDVSQLTQNIICQSSAEWLNDAENNFLSNLDF
LKPIRKDVRSDPKIIQDVSIATDSLLESLGALAVELISMKSWRDMRNEIMYLTGNSTQTP
NHMYQAVSRIVCGHPEGGGLKIKSLNWYEDNNYKALFGSYGNDNDSEPVSAYDNSSTPYC
NNVMKGLESSPISRMIWRALKPLLMGKILYTPDTPATQRIIQEVNKTFQEFGVLRDLGGM
WEEMRPKLWSFMENSEEMDLVRTLLQNNASARFFNAKLSGTDWRVEDVSSFLSKASEDTR
PHGTAYTWREAFNETDQAIQTISRFMECVNLDKLEPVANEERLVNKSMHLLDDRKFWAGI
VFPDMQSNTSDLPPHINYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDMRYIWGGFSYL
QDVIEHGIIRALTGSKEKTGVYIQQMPYPCYVDDVFLRIMSRSMPLFMTLAWMYSVAIII
KGVVYEKEARLKETMRIMGLDNGILWLSWFISSLIPLLISAALLVLILKMGNLLPYSDPG
VVYLFLASFAVVTIMQCFLISTLFSRANLAAACGGIIYFTLYLPYVLCVAWQDYVGFGAK
IVASLLSPVAFGFGCEYFALFEEQGVGIQWSNLLSSPMQEDSYSLTTSISLMLFDAVLYA
LMTWYIEAVFPGQYGIPRPWYFPFTKSYWCGEKCGWITAAPTNNKENAEAVCIEEEPAHL
EPGVYIENLVKVYSNGKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGT
AYIQGKDIRTDLNAIRQNLGVCPQHNVLFSMLTVEEHIWFYARLKGLPEEKVKSEMEQIL
ADLGLPHKSKSRTNQLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDLLLK
YRPGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKTQLGTGYYLTLVKRDFDL
SASSCRTNSTVSYSKASLKKEDSVSESSSDAGLGSDHESETTTIDVSLISNVIFKHVPTA
RLVEDMGHEIMYVLPYESAKAGEFVELFHEIDDRLTDLGISSYGISDTTLEEIFLKVAED
NGVDVELSDGTLPARRNRRHAFGDHQSCLKPFTEDDFDLNDSEGDPESRETDWLGGADGK
GSYQVKGWSLKRQQFVALLWKRFLYARRSRKGFFAQIVLPAVFVCIALVFSLIVPPFGKY
PSLALEPSMYEEQFAFFSNDAPEDRHTNSLLEALMDSPAYNEQCTDQQNDVSKSCPIKDG
EWEVPEIPESVQDIFLNGNWSMENPSPLCECSCEGRKKMLPECPPGAGGLPPPQIKVTAA
ETLQNLTGRNMSDYLVKTYAQIIGKSLKNKLWVNEFRYGGFSLGARSSQALPPGDEITDA
ISHIRKRFSLQAGTAADRFMGSLSIFIHGLDTKNNVKIWFNNKGWHSIGAFLNVMNNAVL
RANLPPGPERSKFGIKAFNHPLNLTKEQLSQVALMTTSVDVLVSICVIFAMSFVPASFVV
FLIQERVNKAKHMQFISGVQPFLYWLANFVWDMCNYIVPATLVIIIFLCFQQEAYVSSTN
LPVLALLLLLYGWSITPLMYPASFFFKIPSTAYVVLTSVNILIGINGSVSTFVLELFGSN
EIGGINDILKNVFLIFPHFCLGRGLIDMVKNQAMADALERFGENRFRSPLAWDMVGKNLF
AMAIEGLIFFCITVLIQYRFCIKARPISTKLKPIGEEDEDVARERQRILGGGGQTDILEL
RQLTKVYKRKQKPAVDRLCVGIPPGECFGLLGVNGAGKTSTFKMLTGDSVVSSGDAYLAG
KSVLTEIDEVHQKMGYCPQFDAINDLLTGREHLEFYAILRGVPEKEVCEVADWGIRKLGL
MKYVDKAAGSYSGGNMRKLSTAMALIGGPPVVFLDEPTTGMDPKARRALWNCILSIIKEG
RSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDGYTIILRVAGADPRLEP
VMEFIERELPGSTLKEKHRNMLQYQLPSSLTSLARIFNILSKNKVQLHIEDYSVTQTTLD
QVFVNFAKDQTDEDHLKDISMNKHDAVVDISQLNAFLVDQKAQESVV
NT seq
6804 nt
NT seq
+upstream
nt +downstream
nt
atggcattctccactcagttgggcttactgttgtggaagaacttcactttccgacggaga
cagactattcagcttctgattgagataatatggccgctcttcatcttcttcatcttgata
tctgtcagaatctattaccctccctacgagcaacatgaatgccactttcccaataaggcc
atgccctctgcgggcactttaccatgggtgcagggcatcatctgcaatgccaacaaccct
tgtttccgctaccccacgcctggagagacgcccggagtggtggggaacttcaatgactcc
atcatctcccgactgttcatcgatgccaagaaaatcctcctctacagccaacaagacaag
agcttcgaaggtttcaaaggactcgtccgggccttgagaaaactgcagaggaacactgaa
ggtttcaagctgaaggacttcctccatgataatgaaacgttgtctgagtttctcgagaaa
aatgctaccctgcccaagcatgctgtgagacagatagtggaggctaacgtcaacttggag
aaggtgctcattaaagggttcggagttcatcttagagacctgtgcaataccacatctctg
gaggatttcgtgaccattgccgacaaggacgtgtctcagctgacgcaaaacatcatctgt
caatcatctgctgaatggctgaatgacgcggagaacaacttcctgtccaacttggacttc
ctgaagccgatacggaaagacgtcaggtccgacccaaagattatccaggatgtgtccata
gcaacagacagcctgctggagagtttgggcgcattagcggtggagcttatcagtatgaag
agctggcgggacatgcgcaacgagatcatgtacctgacgggcaacagcacgcagaccccc
aaccacatgtaccaggccgtgtcccgcatcgtctgcggccacccggagggcggaggcctg
aagatcaagtccctcaactggtacgaggataacaactacaaggccttgttcggcagctac
ggcaatgacaacgacagcgagccggtttccgcttacgacaactcctccacgccctactgc
aacaacgtgatgaagggcctggagtcgagtcccatatcgcgcatgatttggagagctctg
aagccgctgctcatgggaaagatcttgtacacccccgacactcctgccacccagaggatc
atacaagaggtcaacaagacgtttcaagagttcggcgtgctcagggacctcggcggcatg
tgggaagagatgagacccaaactctggagctttatggaaaacagtgaggaaatggacctt
gtgcggacactcctccagaacaacgctagcgctcgcttctttaacgccaagctgagcggg
acagactggcgcgtggaggatgtgtccagcttcttgtccaaggcttcagaggacacgcgt
cctcatgggacagcgtacacctggagagaggcgttcaacgagacggatcaggccatccag
accatctctcggttcatggagtgtgtgaacttggataagttggagccggtggccaacgaa
gaacgtttggtaaacaagtccatgcatctgctggacgaccgcaagttctgggccgggata
gtgtttccggacatgcagtccaacacgtctgatctgccgccccacatcaactacaagata
cgcatggacattgataatgtggagcgcactaacaagatcaaggatggatattgggatccc
ggtcctcgagcggacccgtttgaggacatgcggtacatctggggcggcttctcttacctg
caggacgtgattgaacacgggatcatacgagctctgacgggaagcaaggagaaaactgga
gtctacatccagcagatgccttatccctgctatgtggacgacgttttcctgcggataatg
agccgctccatgcctctgttcatgactctggcctggatgtactcggtggccatcatcatc
aagggtgtggtgtacgagaaggaagcgcggctcaaggagaccatgaggattatgggtctg
gataatgggatcttgtggctgagctggttcatcagtagtctgataccactgctcatcagc
gccgccctactggttctcatcctgaagatggggaatctcctgccgtacagtgaccctggc
gtagtctacttgttcctggcctcctttgccgtcgtgaccatcatgcagtgtttcttgatc
agcacgctcttctcgcgcgctaacctcgccgcggcctgcgggggcatcatatacttcacc
ctctacctgccctatgtgctgtgcgtggcctggcaggattacgtgggcttcggcgccaaa
atagtagcgagcctcctgtctccggtggcgttcggcttcggctgcgagtacttcgctctg
ttcgaggagcagggagtgggaattcaatggagtaaccttctctccagccccatgcaggag
gacagctacagcctcaccacctccatctcactcatgctcttcgacgccgtgctgtacgcc
ctcatgacctggtacattgaagcagtgtttccaggccaatatggcatcccacgtccctgg
tacttccctttcaccaagtcctattggtgtggagagaaatgtggttggattacagcagcg
ccgaccaacaataaagaaaatgctgaagctgtatgtattgaagaggaaccagcccacctg
gaaccaggtgtttacatcgagaacctggtgaaggtctacagcaacggcaaactggctgtg
gatggtttgactctaggtttttacgagggtcagatcacctccttcctgggccacaatggc
gctggaaaaaccacaaccatgtctatcctcactggcctgttcccacccacctcaggcact
gcttatatccagggcaaagacatccgcaccgatctgaacgccatacgccaaaacctgggc
gtgtgtccgcagcacaacgtcctctttagcatgctcaccgtggaggaacacatctggttt
tatgcacgcctgaagggtttgcccgaggagaaggtgaaatcggagatggagcagattttg
gcggacctcggcctgcctcataaaagcaaatctcgcaccaaccagctctcaggaggaatg
cagaggaagttatccgtggcgctggcattcgttggaggatcgaaggttgtgatcctggat
gagccgaccgctggagtcgatccttacgctcgccgtgggatctgggacctgctgctgaag
tatcgtccagggcgcacgatcatcctgtccacccaccacatggacgaagctgatatcctg
ggggatcgtatcgccatcatctcccatgggaagctgtgctgtgtgggttcctctctgttc
ctcaagacccagctgggaacgggatactacctgacgctggtgaagagagacttcgatctc
tccgcaagctcctgccgcaccaacagcaccgtctcctattccaaagcaagtctcaagaag
gaggacagtgtctcggagagcagttctgatgccgggcttggcagcgaccatgaaagcgaa
accaccaccatagatgtctccctgatctccaatgtgattttcaagcacgtccctacagcc
agactagttgaagatatgggccatgagatcatgtacgttctgccttacgagtctgccaaa
gctggagagttcgtggagctcttccatgagatagacgaccggctcaccgacctcggcatt
tccagctatggcatctccgacaccacactggaagagattttcctcaaagtggcagaagac
aacggcgtcgacgttgaactctcagatgggactctaccagcgcgcaggaaccgcagacac
gctttcggggaccatcagagctgcctgaagccttttactgaagacgactttgacctcaat
gactcagaaggtgatccagaatcccgtgagacggactggttgggcggcgctgatggtaaa
ggctcgtaccaggtgaagggctggagtctgaagagacagcagttcgtggctttgctctgg
aaacgcttcctgtacgcccgacgttcccggaaaggtttctttgctcagatcgttcttccg
gctgtgttcgtgtgcatcgccctggtcttcagtctcattgtccctccgtttggaaagtat
cccagtctcgctctggagcccagcatgtatgaggagcagttcgccttcttcagcaatgat
gcaccagaggacaggcacacaaacagtttacttgaagctctgatggacagtccggcttac
aacgaacaatgcacagatcagcagaacgatgttagcaaatcatgtccgattaaagatgga
gagtgggaggttccagagattcccgagagcgttcaggacattttcctcaacgggaactgg
agtatggaaaacccatcgcctctgtgcgagtgcagttgcgaaggaaggaaaaagatgctt
ccggagtgtccgccaggagcaggaggtctgccgccccctcagattaaagtcaccgctgct
gaaaccttgcagaatctgactggcagaaatatgtcagactacttggtgaaaacatacgca
cagatcattgggaaaagcttgaagaacaagctctgggtcaacgaattcaggtatggtgga
ttctcattgggtgccagaagctcacaggccctcccccctggcgatgagatcacagatgcc
atctctcacattcgtaaacgcttcagtcttcaagcgggtaccgcagctgaccgctttatg
ggaagcctgtcgatttttatccatgggcttgacaccaagaacaatgtcaagatctggttc
aataataagggctggcacagtatcggagcgttcctcaacgtcatgaacaatgccgtcctg
cgtgctaatctgccccccggcccggagcgctccaaattcggcatcaaagcgttcaaccat
ccgctcaacctcaccaaagagcagctctctcaggtggcgctaatgacaacctcagtcgac
gtgctggtgtccatctgcgtcatcttcgccatgtccttcgtcccggctagctttgtggtg
ttcctcatccaggagagagtgaataaagccaaacacatgcagttcatcagcggagtgcaa
cccttcctctattggctcgccaactttgtttgggacatgtgcaactacattgtccccgcg
accctggtcatcatcatcttcctctgtttccaacaagaggcctatgtgtcctccaccaat
cttcctgttcttgctctcctgctgttgctctatgggtggtccataacacccctgatgtac
ccagcgtcattcttctttaagattcccagtacagcatatgtggttttgaccagcgttaac
atcctgattgggataaatggcagcgtatccacatttgtcctggagctttttggcagcaat
gagattggaggaatcaacgacatcttgaagaacgtgttcctgatcttccctcatttctgt
ctgggaaggggtctcattgacatggtgaagaaccaagccatggctgacgctctggagaga
tttggtgagaatcgattccgctctcctctggcgtgggacatggtgggcaagaatctcttt
gccatggccatagagggattgattttcttctgcatcaccgtcctgatccagtaccgcttc
tgcatcaaggctaggccgattagcactaagctgaagcccatcggagaggaggatgaggat
gtggccagagaaagacagaggattctgggtggaggaggacagactgatattctggagctc
agacaactcaccaaggtgtataagaggaagcagaagccagctgttgacagactgtgtgtg
ggaatcccaccgggagagtgtttcgggttgctcggtgtgaacggagctggaaagacaagc
accttcaagatgctcacgggagattcagttgtctctagtggagacgcttacttggcggga
aaaagcgtgctgacagagattgatgaagtgcatcagaaaatgggctactgcccgcagttt
gacgccatcaacgacctgctgaccggccgagaacatctggagttttacgccatcctgcga
ggcgtccccgagaaagaagtgtgcgaggtggcggattggggcattcgtaaactgggcctg
atgaagtatgtagacaaagcggctggaagctacagcgggggaaacatgaggaagctttcc
accgcgatggcgctcattggaggaccgccagtggtgttcttggacgaacccaccactggg
atggaccccaaagcccggcgagccctgtggaactgcatcctcagcatcattaaagagggg
cgctcggtcgttctgacctcacacagtatggaggagtgtgaagctctctgcactcgcatg
gccatcatggtgaacggcaggtttcgctgcctgggcagtgtgcagcacttaaagaacagg
tttggtgacgggtacaccatcatcctgcgggtggcgggagccgatccgcggctggagccg
gtgatggagttcatcgagcgggagctgccgggcagcaccctgaaggagaagcacaggaac
atgctgcagtaccagctgccctcctcgctcacatccctcgctcgcatcttcaacatcctc
tccaagaacaaagtgcagctccacatcgaggactactccgtcacacagaccactttagac
caagtatttgtcaattttgccaaggaccaaacggacgaggaccacttaaaagacatttcc
atgaacaaacacgatgccgttgtggacatttctcaactgaacgccttcctcgtagaccag
aaggcgcaggagtcagtggtgtga
DBGET
integrated database retrieval system
