Pimephales promelas (fathead minnow): 120489384
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Entry
120489384 CDS
T08155
Symbol
smarca4a
Name
(RefSeq) SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4a
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
120489384 (smarca4a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pprm03021
]
120489384 (smarca4a)
03036 Chromosome and associated proteins [BR:
pprm03036
]
120489384 (smarca4a)
Transcription machinery [BR:
pprm03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
120489384 (smarca4a)
Chromosome and associated proteins [BR:
pprm03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
120489384 (smarca4a)
Chromatin remodeling factors
BAF complex
120489384 (smarca4a)
PBAF complex
120489384 (smarca4a)
GBAF(ncBAF) complex
120489384 (smarca4a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
HSA
Bromodomain
BRK
QLQ
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
120489384
NCBI-ProteinID:
XP_039542085
LinkDB
All DBs
Position
Unknown
AA seq
1618 aa
AA seq
DB search
MSTPDPPMGGTPRPGPSPGPGPSPGAMLGPSPGPSPGSAHGMMGPSPGPPNSGHPLPPQG
PSGYPQDNMHQMHKPMEGMHDKGIPEDQRYAQMKGMGMRQGGHSGMGPPPSPMDQHSQGY
PSPLGGSDHAPSPVPSNGPPSGPMMPSGPGAVPMEGGDPQNRGVGAGGVAGSGPSGGPPN
AGGPGGPGGPTPFNQNQLHQLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQGMPP
ASGQGAGPLGPGGPVPGGPNYNRPPGMVGPNMPPPGPSGVPPGLQGQPTNGPPKSWPEGP
MVNAAAPASAPQKLIPPQPTGRPSPAPPSVPPAASPVMPPQTQSPGQPAQPPMVLHQKQN
RITPIQKPRGLDPVEILQEREYRLQARIAHRIQDLENLPGSLAGDLRTKANIELKALRLL
NFQRQLRQEVVVCMRRDTALETALNGKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQ
KHQEYLNSILQHAKDFKEYHRSITAKMQKVTKAVATYHANTEREQKKENERIEKERMRRL
MAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRAHKAVQALKDKKKKKKKKKKP
ENAEGVPALGPDGEPLDETSQMSDLPVKVIHVDSGKILTGMDAPKAGQLETWLEVNPGYE
VAPRSDSEDSGSEEDEDEEEEHQPSQAPTEEKKIIPDPDCEDVSEVDVQHIIEHAKQDVD
DEYGSAAFARGLQSYYAVAHAVTEKVDRQSSLLINGQLKQYQIKGLEWLVSLYNNNLNGI
LADEMGLGKTIQTIALITYLMEYKRLNGPFLIIVPLSTLSNWVYEFDKWAPSVVKISYKG
SPAARRAFLPILRSGKFNVLVTTYEYIIKDKQVLAKLRWKYMIVDEGHRMKNHHCKLTQV
LNTHYLAPRRVLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDL
NEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGV
LLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLY
RASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAFRNFKYLRLDGTTKAEDRG
MLLKNFNDPSFNYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQ
NEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQ
DEEEDEVPDDETVNQMIARSEEEFDHFMRMDLDRRREEARNPKRKPRLMEEDELPTWIMK
DDAEVERLTCEEEEEKMFGRGSRQRKEVDYSDSLTEKQWLKAIEEGTLDEIEEEVRHKKT
TRKRKRDRDLDLPGPATPSSSGRSRDKDDDSKKQKKRGRPPAEKLSPNPATLTKKMKKTV
DAVIKYKDGNGRQLSEVFIQLPSRKELPEYYELIRKPVDFRKIKERIRSHKYRSLNDLEK
DVMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKEVESEGEESEEEEDEVDEGSE
SESRSVKVKIKLSRKDKVERGKGRRRTGRSSRPKPVVSDDESEDDQEEEHSASGSEED
NT seq
4857 nt
NT seq
+upstream
nt +downstream
nt
atgtccacccctgacccacctatgggtgggacccctcgacctggcccttccccgggccct
gggccgtctccaggggccatgttagggcctagtcctggaccctcacctggctctgcccat
ggcatgatgggccctagccctgggccccccaactcaggacacccgctacctccacagggc
ccctcaggttacccccaggacaacatgcaccagatgcacaagcccatggaaggcatgcac
gataaaggcattcccgaagatcagcgctacgctcaaatgaagggtatgggcatgagacag
ggtgggcacagtggcatgggacccccacccagtcctatggaccaacactctcaaggttat
ccctctcctctgggtggttctgatcatgcccccagcccggtaccttctaacggccctcca
tctggccccatgatgccttctggtcctggtgccgtccccatggagggcggtgacccgcag
aaccggggcgtaggtgcaggtggtgttgcaggttcgggacccagcggaggacctccaaac
gcaggtgggcctggtggacctgggggacccactcctttcaaccaaaaccagcttcaccag
ctgcgggcacagatcatggcctataagatgctggcacgtgggcagcctctacctgaccac
ctgcagatggcggtgcagggaaagcggcccatgccaggcatgcagcaggggatgccccct
gcttcaggacaaggagcaggacctcttggaccaggtggccctgttcctgggggacccaac
tacaatcgacctcctggaatggtcggtccaaacatgcctcctccaggaccctctggtgtt
cctccaggccttcagggacaacccaccaatggaccacctaaatcttggcctgaagggccc
atggtgaacgctgccgcccctgcaagtgccccacagaagctaatacctcctcagcccacg
ggccgcccttctccagcaccgccttcagttcctcccgctgcctcccccgtcatgccccct
cagacccagtctccgggacaaccggcccagccgcccatggtcctgcatcagaagcagaac
cgcatcacacccatccagaaacctcggggtcttgacccagtggagatcctccaggagaga
gagtacaggttgcaagctcgtattgctcatcgtattcaggacctggagaaccttccaggc
tctctggctggagacttgaggaccaaagccaacattgagctcaaggcacttaggctgctg
aactttcagagacagctccggcaggaagtcgtagtgtgcatgcggcgcgatacggccctg
gagaccgcgctgaatggcaaggcctacaagcgcagcaagagacagtccctgcgtgaagct
cgcatcactgagaaactggagaaacagcagaagatcgagcaggaacgcaagcggcgacag
aaacatcaggaatatctcaacagcatcctgcagcatgctaaagacttcaaggaataccat
cgctccatcaccgcaaagatgcagaaagtgaccaaagccgtcgccacgtaccatgccaac
actgagagagagcagaagaaggagaacgagcgtatcgagaaggagagaatgagaaggctg
atggctgaagatgaagagggttacaggaagctgatcgatcagaagaaagacaaacgtctg
gcttacttgctgcagcagacggacgagtacgtggccaacctcaccgagctcgtcagagct
cacaaagctgtccaggccctcaaagacaagaagaagaagaaaaagaagaagaagaagccg
gagaacgcagagggtgttcctgctcttggtccagatggagagcctctggatgagaccagt
caaatgagtgatttaccggtgaaggtgattcacgtggacagtgggaagattctcaccggc
atggacgctcctaaagctggacagctggagacttggctggaggttaatccagggtatgag
gttgccccgcggtcagatagtgaagatagtggctcagaggaggatgaggatgaggaggag
gagcatcaaccctctcaggctccaacagaggagaagaagatcattccagatccagactgt
gaggatgtgtctgaggtggacgtccagcacatcattgagcatgccaagcaggatgttgac
gatgaatatggtagcgcagcgttcgctcgcggccttcagtcttactacgccgtggctcac
gccgtcacagagaaggtggacagacagtcgagcctgctaatcaacggacagctcaaacag
taccagatcaaaggtctcgagtggctggtgtctctgtataacaataacttgaatggcatc
ttagctgatgaaatgggtttggggaaaaccatccagactatcgcactcatcacctacctc
atggagtacaaacgcctcaacggacccttcctcattatcgtccccctctcgactctgtcg
aactgggtgtacgagtttgataagtgggctccatctgtggtgaaaatttcttacaagggc
tctcctgctgctcgccgcgctttccttcccattttgcgcagcggcaagttcaatgtgcta
gtcaccacttacgagtacatcatcaaagacaagcaagtgctggccaagctccgctggaag
tacatgatagtggacgaaggtcaccgtatgaagaaccaccactgtaaactgactcaggtg
ttgaacacgcactacctggcgcccaggcgtgtgctgctcaccggcacgccgctgcagaac
aagctgccggagctgtgggcgctgctcaacttcctgctgcccaccatcttcaagagctgc
agcaccttcgagcagtggttcaacgctccgttcgccatgactggagagaaggtggacctg
aatgaagaagagaccattctgatcatccgtcgtctgcacaaagtgctccgccccttcctg
ctcaggagactcaagaaggaagtggaggcccaactgcctgaaaaggtggaatatgtgatc
aagtgcgacatgtcggctctacagagagtgctgtacaggcacatgcaggctaaaggagtc
ttgctcactgacggctctgagaaagacaagaagggtaaaggaggcactaagactctgatg
aacaccattatgcagttgaggaagatttgtaaccacccgtacatgttccagcacattgag
gagtctttctcggagcacttgggcttcactggaggcattgttcagggacttgatttgtac
cgtgcctctggtaagtttgagctgctagaccgtatcctgccgaagctccgcgccaccaac
cacaaagtgctgctcttctgtcagatgacctcactcatgaccatcatggaggactacttc
gccttccgcaacttcaaatacctgcgcctggacggaaccactaaggctgaagatcgtggc
atgttgctgaagaactttaatgatccttcctttaattatttcatcttcctgctgagcacc
agagcaggaggtctggggctgaacttgcagtctgctgacactgttatcatctttgacagc
gactggaaccctcaccaggatctgcaagcccaggatcgcgcccatcgtatcgggcagcag
aatgaggtgcgtgtgctgcgtctgtgtaccgtgaacagcgtggaggagaagatcctggcc
gctgccaaatacaaactgaacgtggaccagaaggtcatccaggccggaatgttcgaccag
aaatcctccagccatgagcgcagggctttcctgcaggctatcctggagcacgaagagcag
gatgaggaggaagatgaagttcccgatgacgagaccgttaatcagatgatcgctagaagc
gaggaagagttcgatcacttcatgcgcatggatctggaccggcgtcgtgaagaggctcgt
aacccgaagcgcaaaccccggctgatggaggaggatgagctgcccacctggatcatgaag
gatgatgcggaggtggagaggctcacctgcgaagaagaggaggagaagatgttcggccgc
ggctcccgtcagaggaaggaggtggactacagcgactccctcacggagaaacagtggctg
aaggccatcgaggaaggcaccctggatgagattgaggaggaggtgcgccacaagaaaacg
acccgcaagaggaagcgtgaccgtgacctcgaccttccaggcccagccacgcccagctcc
agtgggcggagcagagataaagacgacgacagtaagaagcagaagaaacgcggccgtcct
cctgccgaaaaactctctcccaaccctgccacgctcaccaagaagatgaagaagactgtg
gatgccgttatcaaatacaaggatggcaatggtaggcaactgagtgaggtgtttattcaa
ctaccgtctcgtaaagagctgccggaatattacgaactcattcgcaaacctgtggacttc
aggaagattaaggagcgcatcaggagccacaagtaccgcagtctgaacgacctggagaaa
gacgtcatgctgctttgccagaacgctcagaccttcaacctggagggatcactgatctac
gaggactctatcgtgctgcagtctgtgttcaccagcgtgcggcagaagatcgagaaagaa
gtagagagcgagggagaagagagtgaggaggaagaggacgaggtagacgaaggatcggag
tctgaatctcgttctgtgaaggtgaagataaagctgagtcgaaaggacaaggtggagaga
gggaagggaagacgccgaactggacgcagctcgcgccctaaacctgtcgttagcgacgat
gagagtgaggacgaccaggaagaggagcattcggctagtggcagcgaagaggattaa
DBGET
integrated database retrieval system
