Pimephales promelas (fathead minnow): 120489408
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Entry
120489408 CDS
T08155
Symbol
thraa
Name
(RefSeq) thyroid hormone receptor alpha-A isoform X1
KO
K05547
thyroid hormone receptor alpha
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm04080
Neuroactive ligand-receptor interaction
pprm04081
Hormone signaling
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
120489408 (thraa)
04081 Hormone signaling
120489408 (thraa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pprm03000
]
120489408 (thraa)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
pprm03310
]
120489408 (thraa)
Transcription factors [BR:
pprm03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
120489408 (thraa)
Nuclear receptors [BR:
pprm03310
]
1. Thyroid hormone like
1A. Thyroid hormone receptor (THR)
120489408 (thraa)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
120489408
NCBI-ProteinID:
XP_039542122
LinkDB
All DBs
Position
Unknown
AA seq
413 aa
AA seq
DB search
MEQKEQELNLPEGDETRWPNGVKRKRKNSQCSMQSTSVNSISVLGYVPSYLEKDEPCVVC
GDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYDSCCIIDKITRNQCQLCRFKKCI
SVGMAIDLVLDDSKRVAKRRLIEENRERRKKEEVVKTLHNRPEPTVTEWELIRMVTEAHR
HTNAQGPHWKQKRKFLPEDIGQSPAPTLDSDKVDLEAFSEFTKIITPAITRVVDFAKKLP
MFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLSGEMAVSREQLKNGGLGVVSD
AIFDLGKSLSQFNLDDSEVALLQAVLLMSSDRSGLTCVEKIEKCQETYLLAFEHYINYRK
HSISHFWPKLLMKVTNLRMIGACHASRFLHMKVECPTELFPPLFLEVFEDQEV
NT seq
1242 nt
NT seq
+upstream
nt +downstream
nt
atggaacaaaaagagcaggagcttaacctgccagagggagatgagacacggtggccaaat
ggagtgaaaagaaaaagaaagaatagtcaatgctctatgcagagcacgtctgtgaatagc
atctctgttctagggtatgttcccagctacctggagaaagatgagccatgtgtggtgtgc
ggggacaaggccaccggctaccattaccgttgcatcacatgtgagggctgcaagggtttc
ttcaggaggacaatacagaagaatcttcatccttcatattcttgtaaatatgacagctgc
tgcatcattgataaaatcacccgcaaccagtgccagctgtgccgcttcaagaagtgcatc
tcggtgggcatggccattgacttggtgctggatgattcaaagcgtgtggccaagaggcgt
ctgattgaggaaaaccgggaacggaggaagaaagaggaggttgtgaaaacgctgcacaac
cgacctgagcccaccgtcacggagtgggagctcattcgtatggtgacggaggctcatcgc
cacaccaacgcccagggccctcactggaaacagaaacgcaagttcctaccagaagacatt
gggcagtctccagcacccacattagacagcgacaaagtcgacctggaggcctttagtgag
ttcaccaagatcatcacccctgccatcacacgagttgtggactttgccaaaaaactgccc
atgttctctgagcttccctgtgaagaccagattatcctgctgaaaggctgctgtatggag
atcatgtccttgcgtgcagcggtgcggtatgacccagagagcgagacgctgaccttaagc
ggagagatggctgtcagtcgagagcagctgaagaatggcgggttaggagtggtgtctgat
gccatctttgatttgggcaagagcctgtcacagttcaacctggatgactcagaggtggcg
ttgctgcaggctgtacttctcatgagctcagatcgttctggactgacatgtgtggaaaag
atcgagaagtgtcaggagacgtacctgttagcattcgagcactacatcaattatcgcaag
cacagcatctctcacttctggcccaagctgctgatgaaggtgacgaacctgcgcatgatc
ggcgcctgtcacgccagccgcttcctgcacatgaaagtggagtgtcccacagaactcttc
cccccgctcttcctagaggtcttcgaggatcaggaggtgtga
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