Pimephales promelas (fathead minnow): 120489430
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Entry
120489430 CDS
T08155
Symbol
ciita
Name
(RefSeq) MHC class II transactivator isoform X1
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
pprm
Pimephales promelas (fathead minnow)
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
pprm01001
]
120489430 (ciita)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
pprm04054
]
120489430 (ciita)
Enzymes [BR:
pprm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
120489430 (ciita)
Protein kinases [BR:
pprm01001
]
Serine/threonine kinases: Other
TAF1 family
120489430 (ciita)
Pattern recognition receptors [BR:
pprm04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
120489430 (ciita)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NACHT
LRR_6
LRR_4
NLRC4_HD2
LRR_14
AAA_25
LRR_8
nSTAND_NTPase5
nSTAND3
AAA_16
TsaE
ABC_tran
AAA_24
Motif
Other DBs
NCBI-GeneID:
120489430
NCBI-ProteinID:
XP_039542170
LinkDB
All DBs
Position
Unknown
AA seq
1170 aa
AA seq
DB search
MSVSLSCCPVMVPFEDVLFQVRKVLQVSPGLLHNLLRELHEANVFSTKYYQSLYEDGEVE
EQRLCEDVCNDGEYLARRLSLPIWQNWDISQSILDSALRKLDDLVPSDAELPDIVSDPMS
ELLPDNVLLEYLESIQSESEEAFDPNFLDNLSSLFDPDTICSQTSLGLGQENASLTNKRS
RKRKVDSPSNKTRTDTDGKPLCKRNKKATACTESPSRGITPTIPSQGSFQLSSNTIQNIL
HIPFRHLPLPSSGGSALQFIHNICPLTPPLIGTVVPTWPTYVLVSPQHVSPGPQILPLSP
ADGTVAPPELTVSVLPVGSSSDRACKSLPSVSVDTLSPIKEGNPQNNTDSPPSKTERKIR
PEAPECVKDYIHHVKSHMRDVCCTMRGGMGMESHYVDVHLIQRKLLIKSGKNANKCLEKE
LVILSDSERKKAKLDRSQVFCSSDSRPKQSVALLGKAGVGKTTFIQRLCLDWASGSLPQF
QFVFLLNFKIFDLTQSNHSLKGLLFDLSTSPCCEDSDSVFKHILSCPDEVLIIFDSFDHI
KDFEGLLQSPAKSPTDTKYTIKQLFSGLFQKEILSGCTVLISTRPKDVLNQVLRKTDCLL
ELGGFSPEDIELYTSKYFGDSSLQGSALKKIKNQSYIFSLCSNPLLCWTTCFLLEHQDSR
GDSLPSTLTDLYHRVTSKHLQLAILGNSSLCKKKQPDIPQLCKMAWEGFKNHNTHVNPGS
STELLSCGLKSGILVSYETSERQENHFADLFTQNLLSALHLVQSKQVNEKMVVANCIVQQ
KKRKVQGESQDVLQRFVTGLVFQTAPDRGSILSSSVNIKAKRKAVEAHLERMKPKDLVPA
RLLELFHCVYETNRAKFAKLLLKNLPENLSFCGAQLCPSDVYVICHLLQHASAMKRTFSI
NLQDTCIPISGLKELVGLKCIESFWAHTADTIGLWEDLHQSNDELNLKKAIEKFTLNPFK
ATQVYHIESLPGLVRIHREKKLPMSECVPALDEGVPALQHLQRLEFELGVQNGPELFPKL
IEVLPSLQSLQHLDLEKNQIGDSGAEKLSGVLQFLTCLKLLNLSQNLIGDVGVEKLAKAL
ASIPSLQSLSLYGNAIADSGAEHLALVLPDMKFLQDLDVKFNKFTDTGATKLSAALKNCN
GMKSLELWNDCIPYGVFEHLRLQDSRIRSL
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtgtctctcagctgctgtccagtcatggttccctttgaggacgtgctgtttcag
gtgagaaaagttttacaggttagccctggcctgctacacaatcttctcagagagctccac
gaggccaacgtcttttctaccaagtattaccagtctctctatgaagatggtgaagttgaa
gagcagcgtttgtgtgaagatgtctgtaatgatggagaatatctggccagaagactctct
ttacctatctggcaaaactgggacatcagccaaagcatcctggattcagctctcagaaaa
ctggacgatttggttccttctgatgctgaattgccagatattgtctcagacccaatgtct
gaactcttacctgataatgtcctcctagaatatcttgagtccattcagagtgaatctgaa
gaagcttttgatcccaacttccttgataacctcagttctctatttgaccctgacacaatt
tgctcacaaacaagcctaggactaggccaagaaaatgcttctttgacaaacaaaaggtca
agaaagcgaaaagttgattcaccttcaaacaaaacccgcacagatactgatggcaaaccc
ttgtgcaaacgcaacaaaaaagcaacagcgtgcactgaaagcccctcaagaggaataaca
cccaccattccatcccagggtagtttccagttgagctcaaacacaattcaaaatatttta
catattccattcagacaccttcctctgccctctagtggtggttcagcactacagttcatc
cacaacatctgccctttaacgccccctctgatcggcactgtggttccgacatggcccacg
tacgtgcttgtgtcgccccaacatgtgagtccaggccctcagatacttccactttcacct
gctgatggcacagttgccccaccggagctcacggtttcagtgctcccagtcggctcatcc
tcagaccgtgcatgcaagagtttgccatcagtatctgtagacacactatctcctataaaa
gaaggaaacccacaaaataacactgattccccaccttccaaaaccgaaaggaaaatccgt
ccagaagcaccagaatgtgttaaagattacatacatcacgtaaagtcccacatgagagat
gtctgctgcactatgcgtgggggaatgggaatggaatcacactacgtggatgtgcatctg
atccagaggaaactccttatcaaatctggcaagaatgcaaacaagtgcttagaaaaagag
ctggtcatcctcagtgattcagagcgaaagaaagcaaagttggacagaagtcaggtgttt
tgtagcagtgattccagacctaaacaatctgtcgctctcctcggaaaagccggagtgggg
aaaaccacgttcattcagcgtttatgcttggactgggcgagcggcagcctgcctcaattt
cagtttgtttttttgctgaactttaaaatttttgacctcacacaatctaaccacagcttg
aaagggttactgtttgatttgtctacatccccctgctgtgaggactcagattctgtgttc
aaacacattctgtcctgtccggatgaagttctcattatctttgacagctttgatcacatt
aaagactttgaggggcttcttcagtcccctgctaaatcaccaacagacactaaatacacc
atcaagcagcttttttcgggtttgttccaaaaggaaatcctctcgggctgcacggttctc
atctccacaaggcctaaagatgttttaaatcaggtgctgcgaaaaaccgactgccttttg
gagcttggtggcttctctcctgaagacatcgagttgtatacatcaaaatattttggggat
tcttccctccaagggagtgcactaaaaaagattaagaatcaaagctacatattcagttta
tgctccaacccgctactttgttggaccacctgcttcctgctcgagcaccaagacagtcgc
ggtgatagtttgccttcaaccctcacagacttgtaccacagagtgacctccaagcatctg
caattggctattcttggaaacagctcattatgtaagaagaaacagcccgacattccacaa
ttgtgcaaaatggcatgggagggattcaagaatcacaatacacatgtaaaccctggcagt
tcaactgagctgctgagctgcggtcttaaaagtggcatacttgtatcctacgaaacatct
gaacgccaagaaaaccactttgcagacctcttcactcagaacctcctgagcgctttgcac
ttggtgcaatctaaacaggtgaatgaaaaaatggtggtggcaaactgcatagtccagcag
aagaaacgaaaggttcagggagagtcgcaggacgtcttgcagaggtttgtcactggattg
gtcttccagacggcacctgatagaggaagcatcctgtccagcagtgtcaacataaaggcc
aaaagaaaggctgttgaagcccatctggagagaatgaagcctaaagatttggttcctgcc
aggttattagaactgtttcattgtgtttatgagaccaacagagccaaatttgccaaactg
ctgttaaaaaacctgcctgaaaatctgtcattctgtggggcgcagctttgcccttcagac
gtgtatgtgatatgccatctcctccagcatgccagcgcaatgaagcggaccttctccatt
aacctgcaagatacatgcattcccatcagtggcctgaaagagcttgtgggactcaaatgt
atcgaatcattctgggcacatacagcagacaccattggcttatgggaggacttgcatcaa
agcaatgatgaactgaacctgaaaaaagccattgagaaattcaccttgaacccattcaag
gcaacacaagtctatcacatagagagcctgcctggccttgtccgaattcacagagagaag
aagttaccaatgagtgaatgtgttcctgcactggatgaaggtgtaccagcactccagcat
ctgcagagattagaatttgagcttggggtccagaatggtccagaacttttccccaaactc
atcgaggtcctaccttctctgcagtctctccaacatcttgatcttgagaaaaaccaaata
ggagactctggagctgagaaactatctggcgttttacagtttttgacatgtctgaaattg
ctaaatctgtctcaaaacttaattggagatgtcggtgtggagaaactggctaaagctctg
gcctcaatcccttctctacagagtctcagtctgtatggaaatgcgattgctgacagtgga
gctgaacacctggccttggttttaccagacatgaaattcctgcaggacttggatgtaaag
ttcaacaagttcacagatactggagctacaaagctcagtgctgctctgaaaaactgcaat
ggaatgaagtctttggagctgtggaatgactgcattccatatggagtttttgaacacctt
cgtcttcaagattcacggataagatcactttga
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