Pimephales promelas (fathead minnow): 120489808
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Entry
120489808 CDS
T08155
Symbol
upf3a
Name
(RefSeq) regulator of nonsense transcripts 3A isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm03013
Nucleocytoplasmic transport
pprm03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120489808 (upf3a)
03015 mRNA surveillance pathway
120489808 (upf3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pprm03019
]
120489808 (upf3a)
Messenger RNA biogenesis [BR:
pprm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
120489808 (upf3a)
mRNA cycle factors
P-body specific factors
120489808 (upf3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
DUF6980
RRM_1
Motif
Other DBs
NCBI-GeneID:
120489808
NCBI-ProteinID:
XP_039542862
LinkDB
All DBs
Position
Unknown
AA seq
481 aa
AA seq
DB search
MRSEKEQRAGSRERGSVEIQFRDCQREQDNVTVNPKHKEEKKEIFSKVVIRRLPPSLSKD
QLEEHLSPLPSFDYFEFFPADQSLYPHLFSRAYINFKNPEDIIIFRDRFDGYVFIDNKGQ
EYPAVVEFAPFQKVSKKKLKKKDAKAGTIEEDPEYRRFLENYSCDEEKSMANPETLLGEI
EAKTRELIAKRTTPLLEYIKNKKLEKQRIREEKREERRRRELEKKRQREEEKRKRREEER
RKRKEAEKQKKLSEKEIKIKLLKKCDRDDDVDSERLKDKGDSGEMEKNRWEKPAGHTKSK
DSKDNRSQIESDKEQREGHGRRQRDKEHRGRDEERKRQRHHYEFDKFMRRKEETKWGKGY
CQDRAKKEQHHAYSYCPETGDKLGKEDREDMGSRKERIRNKSVLAHQEKRTSQSEGPDQI
GGALPAKDRPAMQLYQPGARNRKRTGSGNKAFDFSPISPDHGGELCYKTVIGTGSEKSAD
E
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgaggtctgaaaaggagcagagggctggaagcagggagagaggcagcgtcgagatccag
ttcagggactgtcagagggagcaggacaacgttacggtgaacccgaagcacaaggaggag
aaaaaggagatcttctccaaggttgtcatacgccgactgccacccagtctatcaaaagac
cagctcgaggagcatctgagtcctcttccatcttttgactattttgagttcttcccagct
gatcagagcttatatccgcatctcttctcaagagcgtacatcaacttcaaaaacccagag
gatatcattattttcagagatcgttttgatggctatgtattcattgacaataaaggccaa
gagtatccagctgttgtagaatttgccccatttcagaaggtttccaagaaaaagttaaag
aagaaagatgctaaagctggaacgattgaagaagacccagaatacaggcgatttctggaa
aactactcttgtgatgaagagaaatccatggccaacccagaaacactattgggagagatt
gaagctaaaacccgagagcttatagccaaaaggacgacacccttgttggaatacatcaaa
aacaagaaattagagaaacagagaataagagaggaaaaaagagaggagaggcgtaggaga
gagctggaaaagaagcggcaaagagaggaggagaagaggaaacgcagagaggaagagaga
cgaaagcggaaggaggccgaaaagcagaagaaactctctgaaaaagagattaagatcaag
cttttgaagaagtgtgaccgtgacgatgatgtggactcagagagactgaaagataaagga
gacagcggagagatggaaaagaacagatgggaaaagccggcaggtcacactaagtcaaag
gattcgaaggataacaggagtcaaatcgagagtgacaaggagcagcgggaaggtcacggc
cgtcggcagagggacaaagagcatcgcggcagagacgaggaacgtaagcgtcagaggcat
cactacgagtttgacaagttcatgcgacgcaaggaggagaccaaatggggcaaaggctac
tgccaggacagggccaagaaagaacaacatcatgcctattcctactgcccagagactgga
gacaagctgggaaaagaggacagagaggacatgggcagcaggaaagaacggattcgcaat
aagtctgtgttagcgcatcaggagaaaaggacttcccagtctgaggggccagaccagata
ggaggggctctgccagcaaaggaccgaccagcgatgcagctgtaccaacccggggctaga
aaccgcaagcgcacgggctccggcaacaaggcctttgacttctcgccgatctcccccgat
cacggaggagaactttgctacaagacagtcattggtacaggctcagaaaagagtgctgac
gagtga
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integrated database retrieval system
