Pimephales promelas (fathead minnow): 120489951
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Entry
120489951 CDS
T08155
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120489951 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pprm03019
]
120489951 (xab2)
03041 Spliceosome [BR:
pprm03041
]
120489951 (xab2)
Messenger RNA biogenesis [BR:
pprm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
120489951 (xab2)
Spliceosome [BR:
pprm03041
]
Complex B
Other components
Prp19-related factors
120489951 (xab2)
Complex C
120489951 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_2
Suf
TPR_19
TPR_12
TPR_8
TPR_16
TPR_15
ARM_TT21_C
ARM_TT21
NRDE-2
TPR_1
Tcf25
LTN1_E3_ligase_6th
DUF4515
Motif
Other DBs
NCBI-GeneID:
120489951
NCBI-ProteinID:
XP_039543150
LinkDB
All DBs
Position
Unknown
AA seq
847 aa
AA seq
DB search
MPTLNGKTDVIFEDDDLPYEEEIIRNPYSVKCWMRYIEHKQNAQKSVLNMIYERALKELP
GSYKLWYNYLRERRKQVKGKCITDPTYEEVNNCHERALVFMHKMPRIWIDYCQFMVSQCK
ITRSRRTFDRALRALPVTQHPRIWPLYLRFGRNLPLPETAIRVFRRYLKLSPENAEEYID
YLRSVGRLDEAALRLAAVVNDENFVSKEGKSNYQLWHELCDLISQNPDKVTSLNVGAIIR
GGLTRFTDQLGRLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES
MIAAKMETTSELGQDEDEDIDLELRLARFELLITRRPLLLNSVLLRQNPHNVHEWHKRVK
LYDGQPRQIINTYTEAVQTVDPVKATGKPHNLWVSFARFYEDNEQLDDARTIFEKATKVN
YKQVDDLAAVWCEYGEMELRHENYDQALRILRKATAIPSRKAEYFDASEPVQNRVYKSLK
VWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYFEDSFKAYERGI
ALFRWPNVHDIWNTYLTKFIDRYGGKKLERARDLFEQALDRCPPKYAKTIYLLYAKLEEE
YGLARHAMAVYERATSAVEPEERHQMFNIYIKRAAEIYGVTHTRAIYQKAIEVLPDEHAR
DMCLRFADMESKLGEIDRARAIYSYCSQICDPRLTAHFWQSWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMSSQMLKATTNATGTVSDLAPGESGVDDMRMLEQKAHQLAVEAEQ
DKPKPKDKILFVRSDTSRSELAQLAKQANPDEIDIDEDEDAEDGEPDEVQLEQKTVPTAV
FGGLKDD
NT seq
2544 nt
NT seq
+upstream
nt +downstream
nt
atgccgactttaaacggaaagacagacgttatattcgaagatgatgatttgccttatgaa
gaagaaatcatcaggaatccatattcagtaaagtgttggatgcgttatatcgagcacaag
caaaatgctcagaaatcagtgctcaatatgatctatgaaagagctttaaaagagctgcct
ggcagttacaagttgtggtacaactacctgagagagaggaggaaacaggtgaaaggcaag
tgtatcacagatccaacatatgaggaggtgaacaactgtcatgaaagagcacttgtgttt
atgcacaagatgccgaggatatggatcgactactgtcagttcatggtgtctcaatgcaaa
atcacacggagcagacggacgttcgatcgggcgttacgagcgctccccgttacccagcat
cctcgaatctggcccttgtatcttcgctttggccgtaacttgcctctcccagaaacagct
attcgtgttttccgtcgttacctaaagttgtctcctgagaatgcagaggagtacattgat
tacctgcgttcggttggacgtctggatgaagcggcactccgactggcggcggtggtcaat
gatgaaaactttgtttctaaagagggaaagtccaattatcagctttggcacgagctctgt
gacctcatctcacaaaacccggacaaggtgacctcactaaacgtgggagcgattatccga
ggaggtctcacccgctttactgaccagctgggcagactctggtgttctctggcggattac
tacatacgcagtggacactttgagaaggcgcgagatgtatatgaggaagccatcctaacc
gtagtcactgtgcgagacttcacccaggttttcgacagctatgcgcagtttgaagagagc
atgatcgctgccaagatggagaccacatcggaactgggacaagacgaagatgaagacatt
gacttggagttgcgattggcccgttttgagttgctgataactcgacggccgctcttacta
aacagcgtgctgctccgtcagaaccctcacaacgttcacgagtggcacaagagagtcaaa
ctctatgacggccaaccccgacagatcatcaacacatacacagaggctgtgcaaacagtc
gatcctgtgaaagccacaggaaagcctcacaatctctgggtgtccttcgccagattctat
gaggataacgaacagctagatgacgctcggactatcttcgagaaggccacgaaggtcaac
tacaaacaggtggatgatcttgctgcggtgtggtgcgagtatggagagatggagctgaga
catgagaactatgaccaggctctgcgtatattaaggaaagcaacagcgatcccctcaaga
aaagcagagtattttgacgcatcagaaccggtgcagaatcgagtgtataaatccctgaaa
gtttggtccatgcttgcagatttggaggagagtcttggcacattccagtccacaaaggcg
gtgtatgatcgcatcattgacctccgcatcgccacacctcagatcatcattaactatgcc
atgtttcttgaagaacacaactactttgaagacagcttcaaggcatatgagcgtggcatt
gccctctttaggtggcctaatgtccatgacatctggaacacgtacctcactaagttcatc
gaccgatatggaggcaagaagctggagagagcacgagacctgtttgagcaagcgctggat
aggtgtcctcctaaatacgccaaaacgatctacctgctgtatgctaagctggaagaggag
tacggtttggcgcgacatgccatggctgtgtatgagagagccacttcggctgtagagcca
gaggaacgccatcagatgttcaacatctacatcaaacgggcagcagagatttatggagtc
actcacacaagagcgatctatcagaaagccatcgaggtcctgccagatgaacacgccaga
gacatgtgcctgcgcttcgctgacatggagagcaaacttggagagattgacagagcgaga
gccatctactcttactgctctcagatctgtgatcccaggttgacggctcatttctggcaa
agctggaaggagtttgagattcgccacggtaacgaggacaccatccgtgagatgctgcgg
atcaaacgcagtgtgcaggccacatacaatacacaagtcaacttcatgtcctctcagatg
ctcaaggcaaccactaatgctactggaacagtgtcagatcttgctccgggagagagcgga
gtggatgacatgaggatgctggagcagaaggcacatcaactggctgtagaggccgaacag
gacaaacccaaacccaaagacaagatccttttcgtcagaagtgacacctctcgcagtgaa
ctcgcccaactggccaaacaagctaatcctgacgagattgacattgatgaggatgaggat
gcagaagatggggaaccggatgaagtccagttggagcaaaagactgtcccgactgctgtc
ttcggaggactaaaggacgactga
DBGET
integrated database retrieval system
