Pimephales promelas (fathead minnow): 120489972
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Entry
120489972 CDS
T08155
Symbol
cpsf4
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 4 isoform X1
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120489972 (cpsf4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pprm03021
]
120489972 (cpsf4)
03019 Messenger RNA biogenesis [BR:
pprm03019
]
120489972 (cpsf4)
Transcription machinery [BR:
pprm03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
120489972 (cpsf4)
Messenger RNA biogenesis [BR:
pprm03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
120489972 (cpsf4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
Torus
zf-CCCH_2
zf-CCCH_3
zf-CCHC
zf-CCCH_4
zf-CCCH_RBM22
zf-CCCH_12
zf-CCCH_DUS3L
zf-CCHC_3
Nab2-like_zf-CCCH_
zf-C3H1
Motif
Other DBs
NCBI-GeneID:
120489972
NCBI-ProteinID:
XP_039543182
LinkDB
All DBs
Position
Unknown
AA seq
270 aa
AA seq
DB search
MQELIASADHLKFDLEMAVEQQLGAQPLPFPGMDKSGAAVCEFFMRAACMKGGMCPFRHI
SGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESK
IKDCPWYDRGFCKHGPDCRHRHTRRVICVNYLVGFCPEGKSCKFMHPRFELPMGAAEQPP
LPQQAQSQQKQQNMQPINRSSHSLIQLTNPNINNHHQRMPNVVGIMHSHSNMGGPRGPRP
LDQVTCYKCGEKGHYANKCTKGHLAFLSGQ
NT seq
813 nt
NT seq
+upstream
nt +downstream
nt
atgcaggaattaatcgctagtgccgatcatctcaagtttgatctagaaatggctgtagaa
caacaattgggcgctcaaccattgccatttccaggaatggacaaatctggcgctgctgtg
tgcgagttcttcatgagagctgcttgtatgaaaggtggaatgtgccccttcagacacatc
agtggagaaaagactgtggtgtgcaagcactggcttagaggtttatgcaagaaaggagac
caatgtgaatttttacacgagtatgacatgacaaagatgcctgaatgttatttttactct
aaattcggggagtgcagtaacaaagagtgtccattcttgcacattgacccagaatctaag
attaaagattgcccatggtatgataggggtttttgtaagcatggtccggattgcagacac
agacacacaagaagagtcatttgtgtaaattatcttgttggcttctgtccagagggcaag
tcatgcaaatttatgcacccaagatttgaactcccaatgggtgcggctgaacaaccacca
ttacctcaacaagcacagtctcagcaaaagcagcaaaacatgcagcccataaacagatcg
tcacattcactcatccagttaaccaaccccaatatcaacaaccaccaccagagaatgcca
aatgttgttgggataatgcattctcacagcaacatgggtggacctcgcggtcctcgtcca
ctggaccaagttacatgttacaagtgcggtgagaagggccattacgcaaacaaatgcaca
aaaggacacctggcgtttttgagtggacagtag
DBGET
integrated database retrieval system
