Pimephales promelas (fathead minnow): 120490229
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Entry
120490229 CDS
T08155
Symbol
top3a
Name
(RefSeq) DNA topoisomerase 3-alpha
KO
K03165
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm03440
Homologous recombination
pprm03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
120490229 (top3a)
03460 Fanconi anemia pathway
120490229 (top3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pprm03032
]
120490229 (top3a)
03400 DNA repair and recombination proteins [BR:
pprm03400
]
120490229 (top3a)
Enzymes [BR:
pprm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
120490229 (top3a)
DNA replication proteins [BR:
pprm03032
]
Eukaryotic type
DNA Topoisomerases
120490229 (top3a)
DNA repair and recombination proteins [BR:
pprm03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
120490229 (top3a)
FA (Fanconi anemia) pathway
120490229 (top3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_GRF
Toprim
Zn_ribbon_Top1
Zn_ribbon_GRF_2
zf-C2H2_10
Neprosin_AP
Motif
Other DBs
NCBI-GeneID:
120490229
NCBI-ProteinID:
XP_039543596
LinkDB
All DBs
Position
Unknown
AA seq
1008 aa
AA seq
DB search
MNVLHRSVRVTIHSQLYRQISVNMIRRTQIKKVLCVAEKNDAAKGIAEIMSNGRSRRREG
CSVYNKIYEYEYNLFGQNVTVNMTSVSGHLLALEFKAPFQKWHSCNPVLLFDAEVEKYCP
ENFIPIKRTLEKEVRQCQALVIWTDCDREGENIGFEIINVCKAVKPNIQVFRARFSEITP
NSIRRACETLTEPNINISDAVDVRQELDLRIGASFTRFQTLRLQKIFPESLSDQLISYGS
CQFPTLGFVVERFKAIQAFVPETFFKIKVVHEPNEEESVEFSWKRHRLFNHTACLVLYQM
CMEDPMAKVISVTSKPKSKWRPLPLDTVELEKLSSRKLRISAKETMKIAEKLYTQGFISY
PRTETNMFPQNLNLTLLVEQQTQDNEWGNFAQRILESGGPTPRNGNKSDQAHPPIHPTKY
TNSLQGNEKRLYEFIVRHFLACCSKDAQGQEVTVEIEIAEERFSASGLTIIARNYLEVYP
YDKWYNKVIPLYVPDTTFQPTAIEMVEGQTSPPQLLTEADLISLMEKHGIGTDATHAEHI
ETIKSRMYVGLTADQRFLPGELGMGLVEGYNSMGYEMSKPDLRAELEADLKLVSEGQKDK
ASVLSYHVAKYKAVFIESVRKAKKLDEALSNYLGPAQEITVEEQGEMEMPLPVRKCPQCN
CDMVLKRKKDSTGMLLSCMGFPACKAAVWFPDTVLEVSRDESICSTCRPHPVHMLKFKFK
RGSLPPMMPLEFVGCIGGCDETLREVLNLKYLRGGGGDSGSRPNNSSGSNQHHVPRTNSA
PPSRVENVRPPAPRPRADSTRPPASLPPPRAAQPPASAQGGAIVCNCGQDAILLTVRKEG
PNQGRQFYKCNTGDCKFFLWADQPTEQGAPAGNRGPLSQNFQPSRPSNGFGNMHQQRQSN
RGSGGDEGETMCNCNEPAVTRTVMKDGPNNGRMFHTCGKPRDQQCGFFLWTNENVAPATG
FSGGNGGKHPGIKKASTASNKPPTAKRPRTCGICHEPGHTRVTCPQGQ
NT seq
3027 nt
NT seq
+upstream
nt +downstream
nt
atgaacgttttgcataggtctgtaagagtgacaattcacagtcaactttataggcaaata
tctgtaaacatgataagacgcacgcagattaagaaagtgctgtgtgttgccgagaaaaac
gacgctgctaagggaatagcagaaattatgtcaaatgggagatcgagaagaagagaaggc
tgctctgtctacaacaaaatatatgagtatgaatacaacctgtttggccaaaatgtaact
gtaaacatgacctcagtatcagggcatctcttggctctcgaattcaaagctccttttcag
aaatggcatagttgcaatccagtcctgttgtttgatgctgaggtggaaaagtactgccct
gaaaactttataccaatcaagaggactttggagaaagaggtaagacagtgtcaagctctg
gtcatttggactgattgtgaccgggaaggagagaatatcggctttgagatcatcaatgtc
tgcaaagcagtgaagccaaacattcaggtcttccgtgcacggttctctgagatcacccca
aactccataagaagagcctgcgagaccctcactgagccgaatatcaacatcagtgatgct
gtggacgtgagacaggagcttgatctccgcatcggggcatcgttcaccaggttccagaca
ttacgcttgcagaagatattcccagaatctctctccgatcagctcatcagttatggcagc
tgtcagttcccaacccttggctttgtcgtagagcgttttaaagcaattcaagccttcgtc
cctgaaactttcttcaaaatcaaagttgtccatgagcctaacgaagaggaatcagtcgaa
ttcagctggaaaagacatcgtcttttcaatcacacagcgtgccttgtgctgtatcagatg
tgcatggaggatcccatggcgaaagtgatatctgtaacaagcaaaccaaaaagcaaatgg
cgacctttaccccttgacactgtggaacttgaaaaactgtcttcaagaaaattgaggata
agtgccaaagaaaccatgaaaattgcagaaaagctgtacactcaagggtttatcagttat
cctcgcactgagaccaacatgtttcctcagaacctgaaccttaccctgctggttgagcaa
cagacacaagataatgaatggggaaattttgctcagcgcattttggaaagcggtgggccc
acacctcgaaatggaaacaaatcagatcaggcccatccccccattcaccccaccaaatac
accaacagtttacagggtaatgaaaagcggctgtatgagttcattgtacgtcacttcctg
gcctgttgctccaaagatgctcaaggacaagaggtgacggttgaaattgaaatagctgaa
gagagattctctgctagtggattgacgatcattgcacgcaattatctggaagtgtaccct
tatgacaagtggtacaataaggtaattccattatatgtgcctgacaccacgttccagccc
acagcgattgagatggtggaaggacagaccagtccacctcagcttctgacagaggccgat
ttgatatcgctcatggagaagcatggcattggaaccgatgcaacacatgctgaacacatt
gagaccataaagagtcgcatgtatgtggggctgacggctgaccagaggttccttcctgga
gagctcggcatgggtcttgttgaagggtataactctatggggtatgaaatgtctaaacca
gacctgagagcggagctggaggcggatcttaaacttgtgtcagagggccagaaggacaaa
gcttctgtcctcagttatcatgtggcaaaatacaaggctgtttttattgaatccgtgagg
aaggcaaagaaattggatgaagccttgtccaattatctgggcccggctcaggagattacc
gtagaggaacaaggagagatggagatgccattaccagtgcgaaagtgtcctcagtgtaac
tgtgacatggtgctaaagaggaagaaagacagcacagggatgcttctttcatgtatggga
tttccagcttgtaaagcagccgtgtggtttccagacacagttctggaggtcagcagagac
gagagcatctgttcgacgtgccgtccacatccggtccatatgctcaagtttaaattcaag
agaggaagtttgccacctatgatgccccttgaatttgttggctgcattggaggatgtgat
gagactctcagagaggtcttgaacttaaaatatctcagaggaggaggaggagattctggc
tctcggcctaataacagctctgggtcaaatcagcatcatgtacctcgaaccaactcagct
cccccgtccagggtggagaacgtgagacctcctgcacccagaccccgagccgacagcacc
cgtcccccagccagtctgccacctcctcgggcagcacaaccaccagcttcagcccagggc
ggggccattgtgtgtaactgtggtcaggatgccattcttctcactgtacgcaaagagggt
cccaaccaaggccgtcagttttacaagtgtaacacgggggattgtaaattcttcctgtgg
gctgaccagcccactgagcagggagcgcccgcaggaaacaggggacccctgagtcagaat
tttcaaccttccaggccctcaaacgggtttgggaacatgcatcagcagaggcaaagcaac
agaggatctggaggtgatgaaggtgaaaccatgtgtaactgtaatgagcctgcagttacc
aggactgtcatgaaagatgggccgaacaacggccgaatgttccacacctgtgggaaacca
cgtgatcagcagtgtgggttcttcctgtggacaaatgaaaatgtggctccagccacaggt
ttttctggaggaaatggtggtaaacatcctgggatcaaaaaggccagcactgcctcaaac
aaacctcccacagccaaaagaccaagaacctgtggaatatgtcatgagccgggtcatacc
cgggtcacctgtcctcagggccagtaa
DBGET
integrated database retrieval system
