Pimephales promelas (fathead minnow): 120490693
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Entry
120490693 CDS
T08155
Symbol
whrna
Name
(RefSeq) whirlin
KO
K21879
whirlin
Organism
pprm
Pimephales promelas (fathead minnow)
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
pprm03037
]
120490693 (whrna)
Cilium and associated proteins [BR:
pprm03037
]
Primary cilia and associated proteins
USH complex and associated proteins
120490693 (whrna)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
USH1C_N
T15H9-4_C
HHD_RTEL1
PAH_ZNF598
C2H2_ASCIZ
Motif
Other DBs
NCBI-GeneID:
120490693
NCBI-ProteinID:
XP_039543964
LinkDB
All DBs
Position
Unknown
AA seq
939 aa
AA seq
DB search
MSTDLERLSLNSSSGNSVASSARSLSANVKKLHNALNLLLSDPEREQFIHCLNVYHSKRN
VYDLVQTLKVILNVPSKRQLLPMLRLVIPRSDQLLFDQYTSEGLYLKSDVLARNGDPDGS
QEAANSSPTHGAHFSPACAPQAALRGSPDSISTSSDGTATLIPLLGSNFLPEPPGEIRQV
ILKRHKSNEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKEGLRIGDQIMKVNDKVFDRVTH
AEAVKVLKGSKKLSMSVRSVGRIPGGYVTNHVYTWVDPQGRSVSPPPDLLAEHRSATLRR
SNSQGRSHMQLLQDGDEKKVNLVLDDGRSLGLMIRGGAEYSLGIYITGVDRASAAECGGL
KVGDQILEVNGRSFLGIPHDEAVRVLKSSHHLMMTVKDVGRLPHARTVVGETKWIASSQI
TESSASSSVTGLSLDQGASASGKGGFYKGVAGSQVTLSSLVNQSRAMLEEQARHLLTEPE
RQTMGYYIQEYRDGHIGVEQLVMALFELFNTHAKFSLLSEVRGLVTPQDVERFDGLVLKR
EIEALKARQGGGAGFQDSFSMVSYPDTLASSSASFMTNTTLSSARERLLWLIDMMENDGV
AENNGEQSLERSNALPDISLDEVHSTSDSPPSFKPPPPPGLQHRPSRKSTLSKRHSSSSS
QSGLYFTAPSRSHTKEPKHPKTPKHRTSPPDTLKIMSQHPIGPFPRVQSPNKGKPAVKSS
SPNPPPAPNVPAPPGPPPPPPPPCPDKPAPSSPASNQHFVMVEVHRPNAEPDVNEVRPLP
QARGGTLSQLSDSGQTLSEDSGVDIAESGRLSKDSSPRPARTRAPRDGHGGGETSAKPPG
LLEPTSSLVRVAKSASTLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGQVILEVN
GVSLRGKEHREAARLIAEAFKTKEKDYIDFLITEFNVAL
NT seq
2820 nt
NT seq
+upstream
nt +downstream
nt
atgagcacagacctggagcgcctgtcgctcaactcttcctcgggcaactccgtggcttcc
agcgcgcgttctctgtccgccaacgtgaagaagcttcacaacgctctcaacctgctgctc
agcgaccccgagagagagcagttcatccactgcctcaacgtgtaccactccaagcgcaat
gtgtacgatctggtccagacgcttaaggttatactgaacgtcccgagcaagcgtcagctc
ctgcccatgctgcgtctggtcattccgcgctcggatcagcttctgttcgatcagtacaca
tcagaggggctctacttgaaatctgatgtgcttgcgcgcaatggtgacccggacggctcc
caagaggctgctaattccagtccaacacacggggctcatttctcgcctgcttgcgcgcct
caagccgctctgcgcggatctcctgacagtatcagcaccagcagcgatgggacagcgact
cttattcctttactgggcagcaatttcttaccggagccccctggagagatccgacaggtg
atcctcaagcgtcacaagagcaacgagggtttgggatttagcatccgcggaggttccgag
catggagttgggatctatgtgtcgctggtggaaccgggttcactggcagaaaaggagggt
ttgagaataggagaccagataatgaaagttaacgacaaagtgttcgaccgggtcacgcac
gcagaagcagttaaggtgctgaagggcagcaaaaagctctccatgtcggtgcgttctgtg
ggccgtatcccaggtggttatgtcacgaatcatgtctacacctgggtggatccacagggg
cgcagtgtgtccccaccccctgacctgctggctgagcatcgcagtgccactctgcgcagg
tctaacagtcagggccgcagtcacatgcaacttctccaagacggagatgagaagaaggta
aatttggtgctggatgacggccgttctctgggtctcatgatccgcggaggggctgaatac
tctctgggtatctacattacaggtgtagacagagcgtctgcagcagagtgtggaggactg
aaggtgggagatcaaatcctcgaggtcaacggacggagtttcctcggcatcccacacgat
gaagccgtacgagtgctgaagtcttcacaccatctgatgatgacggtgaaggatgtcggg
cgactgcctcatgcccgcaccgtagtgggcgagaccaagtggatcgcaagctcgcagatc
acagagagttctgccagcagcagtgtcacaggcctctctctggaccagggagcatcagca
tcaggaaagggtggcttttataaaggtgtggcgggatctcaggtgactctgtcgagtttg
gtgaaccagagcagggctatgctggaggaacaggcgaggcatctgctgaccgaaccagag
aggcagactatgggttactacatccaagagtaccgtgatggacacatcggtgttgagcag
ctcgtcatggccctctttgagctcttcaatacacatgccaagttctctctgctgtccgag
gtgaggggactcgtgacccctcaggatgtggagagatttgacggtctggttctgaaacga
gagatcgaagccctgaaggcaaggcaagggggtggagctggatttcaggactccttctcc
atggtctcgtaccctgatacgctggcctcctcctcagccagcttcatgaccaacaccact
ctcagctctgcacgggaaagactgctctggctgatagatatgatggagaacgacggtgtg
gcagagaacaacggggaacagtctctcgagcgtagcaatgccctgccagacatctctctg
gatgaggttcattccacctctgattcccctccttcctttaaaccccctcctcccccaggg
cttcagcaccgtcccagtcgaaaatccacacttagtaaacgtcactcttccagctcctcc
caatcgggcttgtacttcaccgccccttctcgttcccataccaaagaacccaaacaccca
aaaactcccaaacatcgcacttctcctcctgacaccctcaagatcatgagccagcaccct
atcggaccattccctcgggtccagtctcctaataaggggaagcctgctgtcaagtcctcg
tctccgaatcctccgcccgcccctaatgtacctgcaccgcctgggccacctcctcctcct
ccacccccctgcccagataaacccgccccttcgtccccagcatccaatcagcattttgtc
atggtggaggtgcacaggcccaacgcagaacctgatgtgaacgaggtgcggccgctgcca
caggcacgaggagggacgttgtcccagctctcagacagcggacagaccctcagcgaggac
agcggtgtagatattgctgaatctggacgtctaagtaaggatagcagcccacgtcccgcc
cggactagagccccacgggatgggcacggaggaggagaaacatctgccaaaccgccgggt
ctgttggagccgacctcctctctagtgagagtggcaaaaagtgccagcactctgggcatt
gcaatagaaggcggggcaaacacacggcagcccctcccacgcattgttaccatacaaaga
ggtggttcggctcataactgtggacagctaaaggtgggtcaggtaatcctagaggtgaac
ggcgtgtctctcagaggaaaggaacatcgggaagctgcacgtctcatagcggaggccttt
aaaaccaaagagaaggactacattgacttcttgatcacagagttcaacgtggctctatag
DBGET
integrated database retrieval system
