Pimephales promelas (fathead minnow): 120490981
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Entry
120490981 CDS
T08155
Symbol
taf5
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
120490981 (taf5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pprm03021
]
120490981 (taf5)
03036 Chromosome and associated proteins [BR:
pprm03036
]
120490981 (taf5)
Transcription machinery [BR:
pprm03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
120490981 (taf5)
Coactivators
SAGA/TFTC/STAGA complex
120490981 (taf5)
Chromosome and associated proteins [BR:
pprm03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
120490981 (taf5)
STAGA complex
120490981 (taf5)
TFTC complex
120490981 (taf5)
SAGA complex
120490981 (taf5)
SLIK complex
120490981 (taf5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
TFIID_NTD2
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
Beta-prop_TEP1_2nd
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
WDR55
WD40_MABP1-WDR62_1st
NBCH_WD40
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_IFT122_1st
Beta-prop_TEP1_C
Beta-prop_SCAP
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
WDR90_beta-prop_4th
Beta-prop_Vps41
Beta-prop_EIPR1
WD40_RFWD3
Beta-prop_HPS5
Beta-prop_DCAF4
Beta-prop_WDR19_1st
Beta-prop_SPT8
Beta-prop_DCAF12
WD_LRWD1
WD40_like
VPS8_N
PROPPIN
LisH_TPL
LisH_PAC1
Motif
Other DBs
NCBI-GeneID:
120490981
NCBI-ProteinID:
XP_039544458
LinkDB
All DBs
Position
Unknown
AA seq
756 aa
AA seq
DB search
MTSLHSAPGGKMAALQDGPMELDAEKETKPEILTDGTSNLSGNTGNGALSSSPLTAAPAG
GAPKQEDQQTLIAVLQFLKRNKLSESVEILRREAGLTEDQVDSLAADGSGGGKGDEDGGE
GDANSLLSRVSITAAAAPQSTLTPVPVKKDHPDVRVVLSAYSQQGDPSLYQVYYSDLKNF
IESVLDCHRAELSQLFYPLFVHMYLELVYNNNEAKAKAFFDKFSGDQECYYLDDLRVLCG
LSKKEHMKGNEALLDFRTSRFVLRISRDSYQLLKRHLQERHNNQIWNIIQEHLYIDIFDG
MPRSKGQIDSMSGSLGGEAKREVNKAKVFYGLLKEPEIEVPLDDEDDEAENEEGKPKKKK
TKKDSIGSKSKKQDPNAPQQNRIPLPELKDSDKLDKIMYMKESTKKIRLSTDNLPSICFY
TFLNAYQGLTAVDFTDDSSLLAGGFADSTVRVWTVTPKKLRKVKSAADLNLIDKESDDVL
ERIMDEKTASESKILHGHSGPVYGVSFSPDRNYLLSSSEDSTVRLWSLQTFTCLVGYKGH
NYPVWDTQFSPFGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVTCTRFHPNSNYVAT
GSTDRTVRLWDVLNGNCVRIFTGHKGPIHSLAFSPNGKFLASGSTDGRVLLWDLGHGLMI
GELKGHTDTIYALKFSRDGEILASGSMDNTVRLWDAMKAFDDVETDDFTAATGHIHLPDN
SQELLLGTYHTKSTPVIHLHFTRRNLLLAAGGYNSQ
NT seq
2271 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcattgcattcggcgccggggggaaaaatggcggcgttgcaagatggaccgatg
gagctggacgcagagaaagagacaaagcctgaaatacttaccgatgggacatcaaacctc
tcggggaacactggaaacggggcgctctcctcatcgcccctcaccgctgcccccgccggc
ggagccccgaagcaggaggaccaacaaactttgatcgcagtgctgcagtttctaaagcgg
aataaactgtcagagtcggtggagatcctgaggcgagaagcgggtctcacagaagaccag
gtggactctctggcagccgatggcagtggaggaggtaaaggagacgaagacggaggtgaa
ggggatgcgaactctctgctcagccgggtgtccatcacagcagcagccgccccccagagc
acgctgacccccgtgcccgtcaagaaagaccatccagatgtccgtgtggtgctgtcagcg
tacagtcagcagggggatccatctctgtatcaggtgtactacagtgacctgaagaacttc
attgagtcagtgctggactgccaccgcgcagaactgtcccagctcttctaccccctgttc
gttcacatgtacctggagctggtctacaacaacaatgaggccaaagccaaggctttcttt
gacaagtttagcggtgatcaggagtgttactatctggatgacctgcgtgttctttgcggc
ctcagtaagaaagagcacatgaaggggaacgaggctcttctggatttccgcaccagccgt
ttcgtgttgcgcatctcaagagactcgtaccaacttctgaagagacacttgcaggaaaga
cataataaccagatatggaacatcattcaagagcacttgtacatcgacatctttgacggc
atgccccgcagcaaaggtcagatcgacagcatgtccggcagccttggaggagaggccaaa
cgagaagtcaacaaagccaaggtgttctacgggctgctgaaggaaccagagattgaagtc
ccgttagatgatgaagatgatgaagcagagaatgaggaagggaagcccaagaagaagaaa
actaaaaaggacagtataggctccaagagtaagaaacaagacccaaacgcccctcaacag
aacaggatccctctgccagagctgaaggactcggacaaactggataagatcatgtacatg
aaggagagcaccaaaaaaatccggctcagcacagacaacctgccttccatttgcttctat
acgttcctcaacgcctaccagggtttgacggcggtcgacttcactgacgactccagtctg
ttagcgggaggatttgcagactccacagtccgtgtgtggaccgtcacacccaaaaaatta
cgcaaagtcaaatctgcagcagacctgaatctgattgataaagagtctgatgacgttctg
gagaggattatggacgagaagacggccagtgagtctaaaatcctacacggtcacagcggg
ccggtgtatggcgtcagcttcagtccagacaggaactatctcttgtccagttctgaggat
agtacagtcagactgtggagcctgcagacgttcacatgtctcgtggggtataaaggacac
aactatcctgtgtgggacactcagttctcacccttcggatattactttgtgtctggagga
cacgacagagtggcacggctctgggcgacggatcattaccagcccttgcgtatatttgcc
gggcatctggctgacgtcacctgcacacggttccaccccaactccaactatgtggccaca
ggctcgaccgaccgcactgtacgcctctgggatgtcctgaatggaaactgtgtccgcatt
tttacaggtcacaagggacccatccattctctagcattctcacctaatggaaagttcctg
gcatctggatccacagacgggagagttttactatgggatcttggacatgggctgatgatc
ggagaactaaagggccacacggacacaatatatgccctcaagttcagcagagatggagaa
atcctcgcatcaggctctatggataacacagttcggctgtgggacgccatgaaggctttc
gatgacgtggagacggacgacttcactgcagcgacgggccacattcacctgcctgacaac
tcccaggagcttctgctggggacgtaccacaccaaatccacgcccgtcatacacctgcac
ttcaccagacgaaacctgctattggctgcaggaggctacaactcccagtga
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integrated database retrieval system
