Pimephales promelas (fathead minnow): 120490996 Help Entry 120490996         CDS       T08155                                  Symbol pdcd11 Name (RefSeq) protein RRP5 homolog   KO K14792   rRNA biogenesis protein RRP5 Organism pprm  Pimephales promelas (fathead minnow) Brite KEGG Orthology (KO) [BR:pprm00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03009 Ribosome biogenesis [BR:pprm03009]     120490996 (pdcd11) Ribosome biogenesis [BR:pprm03009]  Eukaryotic type   90S particles    Other 90S particles     120490996 (pdcd11) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  S1_RRP5 S1 Spt6_S1 OB_RRP5_4th HAT_PRP39_C HAT_Syf1_CNRKL1_N HAT_PRP39_N Suf TPR_14 TPR_19 HAT_Syf1_CNRKL1_C OB_RRP5 DUF2110 PPR NRDE-2 TPR_16 ARM_TT21_5th ARM_TT21_N Phage_hub_GP28 Motif Other DBs NCBI-GeneID:  120490996 NCBI-ProteinID:  XP_039544486 LinkDB All DBs Position Unknown AA seq 1828 aa AA seqDB search MASMEEDFPRGGAAKKTSGPKHVKTHDVDNLFESRETLVKKKKKKDVDHDEERTRKKQKV DEETLKLNTATSVEILHLRNLKIGTLMLGCVKEVSEFEVVVGLPSGLVGYLPIYNICDSY TKILSNRLDSEDSSEEVVPLSQLLTPGMLVRCVVSSLESAKEGHVSLKVSVNPKDVNKVL SSGTLKPGMTLSGCVESVEDHGYLVDIGVIGTKAFLPKKSIASKQDLNVGQYLSILIEEV KNDGRVVRLCQNPQVLAKATAVAQHGWTLDTLLPGLLIRACVKRVTPHGLIVTFLSSFTG VVDFLHLDEDKASTYSQGQEVLARVVHVEPSTRHVSLSLRSHLLPPGGAVLDVFCTERIG EVVQGCKITDLHYHSGAVIKMPDGITAFVHKNLMKEPKEEFNPNHLLSQSEHSLRIVDYS PMEQIHMVTLRRSIIEMTFFRYQDIKVGQIIEGKVADLQEHGVFVRITDHIRGMIPRIHL ADVVLKNPEKMFYEGLKVKCRVLSMDVQKKRLMLTRKKALVESQLPIFQSYTDAKVGRIS HGVIVFVKKFGCIVRFFGDVKGLVPVGELSTERVENPEGLFFIGQVVQAKVLRCDPENKK LCLSFKAVTEGDIKVEQTEKVDFVIGKAVNVRVCRKVLDGLEVSIVPEEAPAFIPIVHLS DHVTNCLPLWMALEEGDTISNVMCLSKNKKKGITLTKKPLLKACLEDGNIPQRFSELQVG MQMLGWVKNIMPYGVFIDFPYGLFGLAPKDAMADQFITNTSGIFEIGRSVVALVTHLDEE KQRFLVSLKVSELSLFEQGARARLIQGLKERKSIYEMVSGRGESEVLQQLSAVSLGDKIK VTVGDTREDGSVTLTSDRLSEATVLASKSHTEGVNVTPGCKFSAVILHVDPLKSEVQVSL LPKLITNKKKLTKDSKLTATIQYTDTDFAVVSLGDTGHLTIIPLKTHLNNILDSKKFSVG SHMNVTVEDPSSEELGGLPLVAWQHHDTKHKQSRSKSKGQSRELILGEVMTVTVKKLKPM NVLVTLPSGTTGSIHVSQIEESPAVGSFPTSSLKVGTEVEARVIGGHTVRGHNFLPISHP NFGVSIPELSLLPRTLKAGDKQSVETNFTPGDEVLCFPSTYNEGKKMLEVDVKPNLTGTV ELFAMIKKPGQANQPKKLFKPGQTVSAKIVGVSFNKNQPRLSLSLTGMYKLEQGLVTMAT VRKVEPHQGLSLHLPFENWGFASVTDLSDAYADNPLEPYKQGQLVRCYIIEELKERNFSV SLRPSRLHKDKQDITDPDIESISDIKEGQTIRGYVTSINDKGIFVRLSRAITGRVQFQHA TKYFMNDPKSISEYITLNSLVTAKVLSVNAENSHVNLSLLSGDTGKPDLLPKSLDLKLRL TGEKKVKYDEKTAERKRALSESQQQDDETVGQKIKRKKDEERPVKGEHTEEKKTLKEKEK KKKKKKKANTEDSDSGVDVFFREKEETTVDKKCGQVKGKHEETEQKRLQVTFGFPWESTL GSLTPFAAVDDTLESSEDEQEVTSKPVKKSRKELKQEQQNSEQRLSKLETELMDTSARPD SYTAFERLLLSSPDSSLLWLQYMAFHLQATEIEQARAVAERALKTISFREEQEKLNVWVA MLNLENMYGTPDSLQKIFERAIQYCEPLPVYQQLADVYAKSDKIKEAESLYKNMVKRFRQ EKSVYLSYGTFLLRQRQSDAANALLQKALQSLSNKDHVDLIAKFARLEFQYGNTEKGKSM FDKVLSTYPKRTDLWSVFIDLMVKHGSQREVRELFDRVIHLSVSVKKIKFFFKRYLEYEK ANGTPETIQAVKQKAVEYVESKGAEAAS NT seq 5487 nt NT seq  +upstreamnt  +downstreamnt atggcatctatggaggaagatttcccccgtggcggtgcagcgaagaagacatcagggccc aaacatgttaaaacacatgacgtggacaatctttttgaatcacgtgaaacactggttaag aagaagaagaagaaggacgtggaccatgatgaagagagaacccgtaaaaaacagaaagtg gatgaagagactttaaaacttaatactgccacttctgtggaaattcttcatcttcggaat ctgaagattggcactctgatgctgggttgtgtgaaggaagtgtcagaatttgaggttgta gttggtctcccaagcggtctcgttggttacctgccaatctacaacatctgtgactcctac accaagattctcagtaacagactggactctgaagacagttcagaggaagtcgtccctctc tcgcaactacttactcctggaatgctggtcagatgtgtcgtgtcgtctttagaatccgct aaggagggtcatgttagtcttaaagtgtcagtcaacccaaaagatgtcaacaaggttttg agttcaggcactttgaaacctggaatgacactgagtggttgtgtggagagtgtggaagat cacggatacctggttgacatcggagtcattggcactaaagcattcctgcccaaaaagagc attgcctcaaaacaagatctgaatgtgggtcagtacctgtcgatcctgatagaggaagtc aagaacgatggacgtgtggtgcgtctgtgccagaatccccaggttctcgcaaaggccact gctgtggctcagcatggatggactttagacaccctcctgcccggacttctgatccgcgca tgcgtgaagagggttactcctcacgggcttatcgtgacgtttctttcatctttcaccgga gtggttgattttcttcaccttgatgaggacaaggcatcgacctacagccaaggacaggag gttctggcaagggttgtacatgtggagccgtccacacggcatgtgagcctgtccctgcgc agtcatctcctgccaccagggggcgctgtgctggatgtgttctgcacagagcggataggt gaggtggtgcagggctgcaagattactgatctgcactatcactcaggagctgtgattaag atgcccgacggtatcactgcatttgtgcataaaaacctcatgaaggagccaaaagaagag ttcaacccaaaccacttgctgtcccagtctgaacactctctgagaatcgtagattacagt cctatggagcaaattcacatggtcacactgcgcaggagcattattgaaatgaccttcttc cgatatcaagacatcaaagtgggacaaataattgagggtaaagttgcggatttgcaggaa catggcgttttcgtgaggataacggaccacatcagaggaatgatacccagaattcacctt gccgatgtcgtcctaaagaacccagagaagatgttttatgagggcttgaaagtgaagtgc agggtattatcaatggatgttcagaaaaagaggttgatgctgaccaggaaaaaggccctt gtggagtcccaactcccaatcttccagtcctacactgatgccaaggttggccgcatctct cacggcgtcatcgtgtttgtgaagaagtttggctgtatagtccggttctttggagatgtg aagggtctggttcctgtgggggagctgtccaccgagcgtgtggaaaatccagaaggcctc ttcttcattggccaggttgttcaggccaaagtcttgaggtgtgacccggaaaataagaag ttatgtttatccttcaaggccgttactgagggagatataaaggtggagcagactgagaaa gttgactttgtgattggaaaggcagtcaatgtaagagtttgccgcaaagtcctggatggt ctggaagtctccattgttcctgaagaggctccagctttcatacccatagtgcatctctct gatcatgtgaccaactgccttcccctgtggatggcgttggaggagggtgacaccatctct aatgtaatgtgtctcagcaagaacaagaagaagggaattactctcaccaagaaacccctc ctgaaggcctgtctggaggacggcaacatcccgcagaggttctctgagctccaggtgggg atgcagatgctgggctgggtgaagaacatcatgccttatggagtcttcatcgatttcccc tacggactcttcggcctcgctcctaaagatgctatggctgaccagttcatcacaaacaca tcaggcatctttgagatcggccggtcggttgttgccctagtgacccatctggacgaagaa aagcagaggtttttggtcagcctgaaggtgtcagaattgagtctctttgagcaaggtgcc cgcgccagactgatccagggtctgaaggaaaggaagtccatctatgagatggtttctggc agaggggagtctgaagtcctacaacagctctctgctgtgtcgctcggagataaaatcaag gtgacggtgggagataccagagaggacggctcagtcacactgacctcagatcggctcagt gaagccactgtgttggcctcaaagtcccacacagaaggcgtgaatgtgactccgggctgc aaattcagcgcagtgattctccatgttgaccctttaaagtctgaggtccaggtgtcgctg cttcctaagttgatcacaaacaagaagaagttgacaaaggactccaagctcactgcaaca atccagtacaccgatacagactttgctgtcgtctcattgggcgacacaggtcacctgacc atcattccccttaagactcacttaaataacatcttggattcaaagaagttttcagttggt tcccacatgaacgtgaccgtggaggacccgagcagcgaggaattaggaggacttcctctt gtagcgtggcagcaccatgataccaaacacaagcagtccagatccaagagcaaaggtcaa tcccgtgagctcattcttggggaagtgatgacggtcacagtaaagaagttgaaacccatg aacgtgctggtgacgctgccgtcggggaccacaggaagtatccatgtgtctcagatagag gagtctcctgcggtcggcagcttcccaacatcgtccctgaaggtcgggacagaggtcgaa gccagagtgattggagggcacacagttcgtggtcacaatttcctgccaatctctcacccc aactttggtgtttccatacctgaactcagtcttctgcccagaacactgaaagctggtgac aagcagtcagttgagacaaacttcacacctggagatgaagtcttgtgcttcccgtcaacg tacaacgaagggaaaaaaatgttggaagttgatgtgaagcccaacctcactggaaccgtt gagctgttcgccatgattaaaaaacctgggcaagctaatcaaccaaagaagctgtttaaa ccaggacagaccgtttctgcaaagattgttggtgttagtttcaacaagaatcaaccacgg ctttctctgtcactcacagggatgtacaagctggagcaagggttggtcactatggcgacg gttcggaaagttgagcctcaccagggattgtcgcttcatctcccttttgagaattggggt tttgcttcggtaacggatctctctgatgcgtatgctgacaacccactggagccctacaaa cagggccaactagtccggtgctatattattgaggagctgaaagagaggaacttcagcgtt tcattacgcccctccagattgcataaggacaagcaagatattacagacccagacattgag tcaatttccgatataaaagagggccagactatccgaggatatgtgacttctattaacgat aaaggcatatttgtgaggttatcaagggccatcactggaagagttcagttccaacacgct acaaaatacttcatgaacgacccaaaatctatttctgaatacattaccctgaattcactg gtgacggccaaggttctcagtgtgaacgcagagaacagccacgtgaacctgtcgctcctg tcgggggacactgggaaaccagatctacttcccaaatctcttgatctaaaactacgtctg acaggagagaagaaagtgaaatatgacgaaaaaactgccgaaaggaaacgggctctttct gaaagccaacaacaagacgatgagacagttggacagaagataaaaaggaaaaaagatgaa gaacgcccagtgaagggagaacacacagaagagaagaaaaccctaaaagagaaggagaag aagaagaagaagaaaaagaaagcaaataccgaggacagtgacagtggtgtagatgtgttt ttcagagagaaggaagaaactacagtggataaaaagtgtggccaagtaaagggtaaacat gaggaaacggaacaaaaacggctgcaggtgacatttggctttccgtgggaatcaacgctg ggatctttaacaccttttgccgcagtagacgacacccttgaatccagtgaggatgagcag gaagtcacgagcaagcccgtgaaaaagtcccgtaaagagttaaagcaggagcagcagaat tcggagcagcggctcagcaagctggagacggagctcatggacacatctgcacgacccgac agctacacggcgtttgagcgtctgctcctgtcgtctccggacagctccctcctctggctg cagtacatggctttccatctgcaggccacggagatcgagcaggcgcgcgcagtcgcagag agagccctcaaaaccatctccttcagagaggaacaggaaaagctgaacgtgtgggtggcc atgttgaatctggagaacatgtacgggacaccagacagtttgcagaagatctttgaacgg gccatccaatactgtgaacctcttcctgtgtaccagcagcttgccgacgtttatgccaag tcggacaagatcaaagaggctgagagtctttataaaaacatggtgaaacgcttcagacag gagaaatctgtatatctgagttacggcaccttcctgctacgccagcgtcagagcgacgct gcaaatgccctccttcagaaggcgctgcagagcctgtccaataaagatcacgtggacctg attgccaaatttgcccggttggagtttcagtacgggaatactgagaaaggcaaatccatg tttgacaaggtcctgagtacctaccccaaacgcacagacctgtggtccgtcttcatagat ctgatggtaaagcacggctctcagagggaagtgagggagctttttgaccgtgtgattcac ctgagcgtgtcggtgaagaagatcaagttcttcttcaagcggtacctagagtacgagaag gcaaacggcacacctgagaccatccaggctgtcaaacagaaagcggtggaatacgtagag tcgaaaggagccgaagccgccagctag

DBGET integrated database retrieval system