Pimephales promelas (fathead minnow): 120491373
Help
Entry
120491373 CDS
T08155
Symbol
smarcc2
Name
(RefSeq) SWI/SNF complex subunit SMARCC2 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
120491373 (smarcc2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pprm03021
]
120491373 (smarcc2)
03036 Chromosome and associated proteins [BR:
pprm03036
]
120491373 (smarcc2)
Transcription machinery [BR:
pprm03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
120491373 (smarcc2)
Chromosome and associated proteins [BR:
pprm03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
120491373 (smarcc2)
PBAF complex
120491373 (smarcc2)
GBAF(ncBAF) complex
120491373 (smarcc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_1
SWIRM-assoc_3
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
Motif
Other DBs
NCBI-GeneID:
120491373
NCBI-ProteinID:
XP_039545081
LinkDB
All DBs
Position
Unknown
AA seq
1033 aa
AA seq
DB search
MAVRKKDGGPNVKYFEASDTVSQFDNVRVWLGKNYKKYIQAEPPTNKSLSSLVVQLLQFQ
EEVFGRHVSNPPLTKLPMKCFLDFKSGGALCHILAAAYKFKSDQGWRRFDFQNPSRMDRN
VEMFMTIEKSLVQNNCLSRPVIYLSSEIEPKLLGKLKDIIKRHQGSVTEDKLSSSHVVVP
IPASLEDEEWVRPVMKRDKQMLLHWGYWPDSYDTWISASEVEAAVEDPPTAEKPRKVHAK
WILDLDQFNEWMNEEDYEVGEGGPRRKRISAKTLTDEVSTPDERRDKKPSSAKKRKRSPS
PSPTPPPQESKKKNTKKGPTTPYTKSKRGQREEEQEDLTKELDEPSPVPAVEEATLPKTV
TKKDSDSTPVKGGTMTDLDEQEDESMETVGKEEEEGSQSVKGEPVKGSDLHEDNVTEQTH
HIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLT
STACRRNLAGDVCAIMRVHAFLEQWGLINYQVDSESRPTPMGPPPTSHFHVLADTPSSLV
PLQPKASQTSSSQQMLSFPDKVKDKPADLQNFGLRTDVYSKKSGPVKNKNAASATREWTD
QETLLLLEGLEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLEESSASLGPLAYQP
VPFSQAGNPVMSTVAFLASVVDPRVASAAAKSALEEFSRMKEEVPAALVEAHVRRVEEAA
RASGRSDPLYGLEGSGIAGTGLEDSDKPAEDGNEENKSNDGQSSQDKKDNKESKDGPSEE
EEKQGENGKKEEERVREGETDRESEKTDSEMADGEKEKERKEGSEEGQRDGESEGEKKAK
VERDVGEGNLSTAAASALAAAAVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEE
LETIMDREREALEYQRQQLLADRQSFHMEQLKYAEMRARQQHFQQIQHQHHSNQPGNQSG
STPSVTHQSVTPSVPPPTASPAPVPASNAHSEAPPPASHSSPPTNTQAGAAHDSSTPLPG
DSLYPNAPVPPPQ
NT seq
3102 nt
NT seq
+upstream
nt +downstream
nt
atggcggtacggaagaaagacggcggcccgaatgtaaaatatttcgaagcgtctgatacc
gtctcgcagttcgacaatgtccgagtttggctgggcaagaattataaaaagtatattcaa
gcagagccccccaccaataaatctttatcgagtctggtggttcaactgcttcagtttcaa
gaggaagtgtttggccgacatgtcagcaaccctccccttactaagctaccgatgaagtgt
tttttggatttcaaatctggaggagccctgtgtcatattctggccgctgcctacaagttt
aagagtgatcaaggatggaggagatttgacttccagaacccttccagaatggaccgcaat
gttgaaatgttcatgactatagagaaatctttggtacagaataactgtttgtcccgacct
gtgatttacctgagttcagagatagagcccaaactactgggaaaactgaaggacatcatt
aaacgacaccaggggtctgtgactgaagataagctttcgagctctcatgtagtggtgcct
attcctgctagtctggaggacgaagagtgggtccgtcctgtaatgaagagagacaaacag
atgctgctacactggggctactggcctgatagttatgacacatggatctcagccagtgag
gtggaggctgctgtggaggatccgcccactgctgagaagcccaggaaggttcatgccaag
tggattctggacctggatcagtttaatgagtggatgaatgaggaagactatgaggtggga
gagggaggaccgaggaggaagaggatttcagcgaagactctcacagatgaagtgagcact
ccagatgaaaggagggataaaaaacccagcagtgccaaaaagaggaagcgttccccgtct
ccatctcctacccctccaccgcaggagagcaagaagaaaaacaccaagaaagggcccact
acaccctacactaagtccaaaagaggacagagagaggaagaacaggaagatctgactaaa
gagttagatgaaccctcacctgtgcctgcagtggaggaagctacactacctaaaacagtg
actaagaaggattcagattctactccagtgaaaggaggcactatgactgacctggatgag
caagaggatgaatcaatggagactgttggaaaggaggaagaagaaggttcccagagcgtg
aaaggagaaccggtgaagggatccgatcttcatgaggataatgtcactgaacagacccat
catatcattatccctagctatgctgcttggtttgactataacagtgtccatgctattgag
cgcagagcactgcctgagtttttcaatggaaagaacaagtcgaagactcctgaaatttat
ctggcataccgtaacttcatgatcgacacgtacagactgaacccacaagagtatttgacc
tccacagcttgccgtagaaacctggctggagatgtttgtgccattatgagagtccatgcg
tttctggaacagtggggcttgattaactatcaggtggattcagaaagtcggcccactccc
atggggcctccacccacctcacactttcacgtactggcagatactccatcaagtctggta
ccactacagcctaaagcatcccagacttcatcttctcaacagatgctatcattccctgac
aaggtgaaggacaaacctgccgacctacagaactttggtttgaggacagatgtgtacagt
aagaagagtggtccagttaaaaataaaaatgctgccagtgccactcgggaatggacggac
caggagacgttgctactgctggagggtctagagatgtataaagatgactggaataaagtt
tcggagcacgtgggcagccgcacacaggatgagtgcattctccacttcctgcgtctaccg
attgaagacccctacctggaggaaagctccgcctccctgggcccgctagcctatcagccg
gttccgttcagtcaagcggggaaccctgttatgagcactgtggcgttcctggcctctgtg
gttgacccacgagtggcttcagctgctgctaaatctgcgcttgaggagttctctcgaatg
aaggaggaggtaccagctgcattggtggaggctcatgtgcgtcgagtggaggaggcggcc
agagcaagcggaaggtcagaccctctctacggcctggagggcagcggcatcgcaggaacc
ggtcttgaagactctgacaaacccgcagaggatggaaatgaggagaataaaagcaatgat
ggtcaatccagccaagataagaaagacaataaggagagcaaagatggacccagtgaggag
gaagaaaaacaaggagagaacggcaagaaagaggaagagagagtgagagagggggaaaca
gacagagagtcagagaaaacagactcagaaatggccgatggcgagaaggagaaagaacgg
aaggagggatccgaagagggtcagagggatggagagagtgagggagagaagaaggcaaag
gtggagagagatgtaggagagggaaacctgtccactgctgctgcttcggcgctagctgct
gctgccgtgaaagctaagcacttggctgcggtggaggagaggaagatcaagtctctggtg
gctctgctggtggagacccagatgaagaaactggagatcaaacttagacactttgaagag
ttggagaccatcatggacagagagagagaggcgttggagtatcagagacagcagcttctt
gctgatcgtcagtcgtttcatatggagcagttgaagtatgctgagatgagagccagacag
caacacttccagcagatccaacaccagcatcatagcaaccagcctggcaaccagtctggc
agtactccatctgtaacccaccaatctgtcactccatctgtcccgcccccaacggcaagc
cccgcccctgtgcccgcctctaatgcccacagtgaagctcctccacctgcctctcacagt
tctcccccgaccaacacacaggctggagcagcacacgattccagcactccacttccaggg
gattctctctatccaaacgcccctgtgcctccaccacagtaa
DBGET
integrated database retrieval system
